Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17654 Trifolium pratense HOM05D005043 ORTHO05D006182 2.0e-29 131.7 65 100.0
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 1.4e-19 99.0 63 76.2
Medtr6g052000 Medicago truncatula HOM05D005043 ORTHO05D006182 5.5e-19 97.1 54 87.0
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 2.5e-16 88.2 53 77.4
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 9.6e-16 86.3 52 78.8
Psat3g076840 Pisum sativum HOM05D005043 ORTHO05D006182 2.8e-15 84.7 70 67.1
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 4.8e-15 84.0 55 67.3
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 8.2e-15 83.2 50 76.0
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 3.1e-14 81.3 70 65.7
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 3.1e-14 81.3 58 62.1
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 4.1e-14 80.9 59 67.8
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 6.9e-14 80.1 53 69.8
Psat3g076960 Pisum sativum HOM05D005043 ORTHO05D006182 6.9e-14 80.1 53 73.6
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 9.0e-14 79.7 53 69.8
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 1.2e-13 79.3 53 75.5
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 1.5e-13 79.0 51 72.5
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 3.4e-13 77.8 49 75.5
Psat3g076920 Pisum sativum HOM05D005043 ORTHO05D006182 4.5e-13 77.4 50 76.0
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 5.9e-13 77.0 49 75.5
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 5.9e-13 77.0 49 75.5
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 5.9e-13 77.0 49 75.5
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 5.9e-13 77.0 48 75.0
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 5.9e-13 77.0 54 68.5
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 7.6e-13 76.6 49 75.5
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 7.6e-13 76.6 49 75.5
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 7.6e-13 76.6 55 63.6
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 1.0e-12 76.3 49 75.5
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 1.0e-12 76.3 49 75.5
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 1.0e-12 76.3 49 75.5
Hund10554 Selenicereus undatus HOM05D005043 ORTHO05D006182 1.0e-12 76.3 74 52.7
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 1.3e-12 75.9 49 75.5
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 1.3e-12 75.9 50 72.0
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 1.7e-12 75.5 49 73.5
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 1.7e-12 75.5 49 73.5
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 3.8e-12 74.3 52 71.2
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 3.8e-12 74.3 53 66.0
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 3.8e-12 74.3 56 67.9
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 3.8e-12 74.3 54 64.8
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 3.8e-12 74.3 54 64.8
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 3.8e-12 74.3 49 69.4
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 5.0e-12 73.9 50 66.0
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 6.5e-12 73.6 50 66.0
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 6.5e-12 73.6 49 71.4
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 6.5e-12 73.6 46 71.7
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 8.4e-12 73.2 56 67.9
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 8.4e-12 73.2 55 69.1
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 8.4e-12 73.2 53 64.2
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 1.1e-11 72.8 48 64.6
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 1.1e-11 72.8 53 66.0
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 1.4e-11 72.4 50 66.0
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 1.4e-11 72.4 52 63.5
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 1.4e-11 72.4 57 63.2
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 1.4e-11 72.4 50 70.0
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 1.4e-11 72.4 53 67.9
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 1.9e-11 72.0 51 66.7
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 1.9e-11 72.0 49 71.4
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 1.9e-11 72.0 49 69.4
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 1.9e-11 72.0 49 69.4
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 1.9e-11 72.0 49 69.4
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 1.9e-11 72.0 48 70.8
PSO478G1721 Papaver somniferum HOM05D005043 ORTHO05D006182 1.9e-11 72.0 53 64.2
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 2.5e-11 71.6 48 72.9
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 2.5e-11 71.6 48 72.9
CSS0038261 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 2.5e-11 71.6 50 68.0
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 2.5e-11 71.6 53 66.0
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 2.5e-11 71.6 53 62.3
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 2.5e-11 71.6 50 66.0
PSO782G5034 Papaver somniferum HOM05D005043 ORTHO05D006182 2.5e-11 71.6 53 66.0
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 2.5e-11 71.6 49 69.4
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 3.2e-11 71.2 47 68.1
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 3.2e-11 71.2 49 71.4
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 3.2e-11 71.2 50 64.0
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 3.2e-11 71.2 50 64.0
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 4.2e-11 70.9 63 57.1
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 4.2e-11 70.9 49 65.3
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 4.2e-11 70.9 50 66.0
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 4.2e-11 70.9 46 67.4
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 4.2e-11 70.9 58 60.3
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 7.2e-11 70.1 59 59.3
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 7.2e-11 70.1 53 64.2
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 9.3e-11 69.7 65 52.3
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 9.3e-11 69.7 52 67.3
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 9.3e-11 69.7 52 67.3
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 9.3e-11 69.7 49 65.3
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 1.6e-10 68.9 53 64.2
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 2.1e-10 68.6 46 69.6
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 2.7e-10 68.2 53 60.4
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 3.5e-10 67.8 46 69.6
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 3.5e-10 67.8 53 66.0
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 4.6e-10 67.4 51 62.7
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 1.0e-09 66.2 50 62.0
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 1.0e-09 66.2 52 57.7
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 1.3e-09 65.9 55 60.0
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 2.3e-09 65.1 53 58.5
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 2.3e-09 65.1 53 58.5
ECA240G0297 Erigeron canadensis HOM05D005043 ORTHO05D006182 2.3e-09 65.1 49 65.3
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 5.1e-09 63.9 46 65.2
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 5.1e-09 63.9 52 59.6
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 8.7e-09 63.2 52 59.6
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 1.1e-08 62.8 52 57.7
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 1.1e-08 62.8 49 61.2
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 5.7e-08 60.5 44 61.4
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 5.7e-08 60.5 53 56.6
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 1.6e-07 58.9 49 55.1
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 4.8e-07 57.4 52 50.0
Zm00001eb153930 Zea mays HOM05D005043 ORTHO05D006182 2.4e-06 55.1 58 51.7
SEGI_37980 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 4.1e-06 54.3 46 54.3
RcHm_v2.0_Chr5g0030891 Rosa chinensis HOM05D005043 ORTHO05D006182 9.0e-06 53.1 47 61.7


User provided reference genes

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