Gene: COL.COLO4_17542

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_17542
  • Transcript Identifier COL.rna16306
  • Gene Type Coding gene
  • Location AWUE01016357.1 : 20270-23971 : positive

Gene Family Information

  • ID HOM05D005043
  • #Genes/#Species 148/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna16306
  • GenBank OMO92491.1
  • id gene17514
  • gene_name COLO4_17542
  • uniprot A0A1R3JCE5

Descriptions

  • Description Zinc finger, PARP-type
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT3G14890
GO:0080111
ISO
PLAZA Integrative OrthologyDNA demethylation AT3G14890

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G14890

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023214 HAD superfamily
IPR006549 HAD-superfamily hydrolase,subfamily IIIA
IPR006551 Polynucleotide 3'-phosphatase
IPR001510 Zinc finger, PARP-type
IPR036412 HAD-like superfamily
IPR013954 Polynucleotide kinase 3 phosphatase
IPR036957 Zinc finger, PARP-type superfamily
Mapman id Description
14.5.6 DNA damage response.base excision repair (BER).DNA phosphatase (ZDP)