Gene: PGSC0003DMG400007070

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400007070
  • Transcript Identifier PGSC0003DMT400018210
  • Gene Type Coding gene
  • Location ST4.03ch07 : 52546267-52552967 : positive

Gene Family Information

  • ID HOM05D005043
  • #Genes/#Species 148/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37433133
  • id PGSC0003DMG400007070.v4.03
  • uniprot M1AA86

Descriptions

  • Description Polynucleotide kinase-3'-phosphatase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0098506
IEA
GOA Databasepolynucleotide 3' dephosphorylation
GO:0046939
IBA
GOA Databasenucleotide phosphorylation
GO:0006281
IBA
GOA DatabaseDNA repair
GO:0080111
ISO
PLAZA Integrative OrthologyDNA demethylation AT3G14890

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046404
IBA
GOA Databasepolydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0046403
IBA
GOA Databasepolynucleotide 3'-phosphatase activity
GO:0003690
IBA
GOA Databasedouble-stranded DNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G14890

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001510 Zinc finger, PARP-type
IPR006549 HAD-superfamily hydrolase,subfamily IIIA
IPR023214 HAD superfamily
IPR006551 Polynucleotide 3'-phosphatase
IPR036412 HAD-like superfamily
IPR036957 Zinc finger, PARP-type superfamily
IPR013954 Polynucleotide kinase 3 phosphatase
Mapman id Description
14.5.6 DNA damage response.base excision repair (BER).DNA phosphatase (ZDP)