Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 2.9e-169 599.4 547 100.0
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 2.5e-141 506.5 496 91.1
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 1.6e-140 503.8 324 94.4
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 1.1e-139 501.1 325 91.7
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 3.3e-133 479.6 327 78.9
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 1.1e-128 464.5 326 86.2
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 3.9e-126 456.1 326 84.0
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 1.9e-125 453.8 321 83.8
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 5.6e-125 452.2 326 83.7
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 6.9e-123 445.3 497 83.3
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 1.7e-121 440.7 321 82.6
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 3.8e-121 439.5 325 82.5
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 6.0e-119 432.2 321 82.6
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 4.9e-113 412.5 487 78.4
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 5.7e-109 399.1 329 67.2
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 9.6e-109 398.3 280 74.3
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 1.4e-107 394.4 337 74.8
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 3.1e-107 393.3 324 76.5
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 2.0e-106 390.6 505 78.2
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 2.6e-106 390.2 279 72.8
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 3.4e-106 389.8 324 74.7
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 3.4e-106 389.8 327 74.6
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 5.9e-106 389.0 328 72.9
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 5.9e-106 389.0 324 75.6
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 7.6e-106 388.7 281 72.2
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 2.2e-105 387.1 327 74.0
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 3.8e-105 386.3 327 74.0
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 6.5e-105 385.6 328 73.2
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 1.9e-104 384.0 323 72.1
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 1.9e-104 384.0 327 74.0
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 2.5e-104 383.6 324 72.8
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 7.9e-103 378.6 329 72.6
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 3.9e-102 376.3 328 72.6
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 7.4e-101 372.1 324 71.6
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 9.7e-101 371.7 279 69.2
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 4.8e-100 369.4 327 70.6
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 6.3e-100 369.0 497 71.8
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 1.4e-99 367.9 331 70.4
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 2.4e-99 367.1 326 72.1
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 3.1e-99 366.7 282 70.2
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 4.1e-99 366.3 499 73.5
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 4.1e-99 366.3 279 69.2
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 5.3e-99 365.9 279 69.2
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 5.3e-99 365.9 279 69.2
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 5.3e-99 365.9 283 68.2
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 9.1e-99 365.2 499 73.5
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 5.9e-98 362.5 499 73.5
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 1.9e-96 357.5 324 68.2
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 3.2e-96 356.7 283 67.1
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 1.2e-95 354.8 330 67.9
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 1.2e-95 354.8 324 68.8
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 2.1e-95 354.0 323 69.3
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 4.6e-95 352.8 295 74.6
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 1.4e-94 351.3 282 66.0
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 3.9e-94 349.7 320 69.4
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 5.1e-94 349.4 275 68.0
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 1.1e-93 348.2 277 68.2
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 1.5e-93 347.8 274 65.3
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 2.0e-93 347.4 249 71.9
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 1.7e-92 344.4 319 70.2
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 6.3e-92 342.4 326 67.8
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 8.2e-92 342.0 320 67.2
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.8e-91 340.9 324 67.0
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 3.1e-91 340.1 325 66.8
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 6.9e-91 339.0 329 66.3
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 6.9e-91 339.0 282 64.5
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 7.7e-90 335.5 280 64.3
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 3.8e-89 333.2 468 77.1
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 6.5e-89 332.4 318 67.0
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 1.1e-88 331.6 277 66.4
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 7.2e-88 328.9 306 70.9
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 1.0e-86 325.1 326 69.6
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 3.9e-86 323.2 277 65.3
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 4.4e-85 319.7 275 65.1
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 3.7e-84 316.6 253 67.2
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 1.8e-83 314.3 277 64.6
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 4.1e-83 313.2 322 64.0
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 5.3e-83 312.8 322 64.6
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 5.3e-83 312.8 283 70.7
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 1.2e-82 311.6 285 58.9
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 2.6e-82 310.5 320 64.1
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 2.6e-82 310.5 320 64.1
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 3.5e-82 310.1 320 64.1
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 3.5e-82 310.1 322 63.7
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 3.5e-82 310.1 320 64.1
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 3.5e-82 310.1 320 64.1
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 4.5e-82 309.7 283 68.9
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 4.5e-82 309.7 500 70.2
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 1.3e-81 308.1 322 63.0
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 1.7e-81 307.8 324 63.0
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 2.2e-81 307.4 308 64.3
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 1.1e-80 305.1 315 64.4
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 2.5e-80 303.9 322 62.7
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 4.2e-80 303.1 322 63.7
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 9.4e-80 302.0 320 63.4
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.4e-80 302.0 277 60.6
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.7e-79 299.7 251 64.1
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 6.1e-79 299.3 277 60.3
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.3e-77 293.5 269 61.3
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 4.4e-77 293.1 280 59.3
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 1.7e-76 291.2 324 63.0
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.8e-76 290.4 249 62.7
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.8e-75 287.7 466 71.2
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.8e-75 287.7 466 71.2
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 2.4e-75 287.3 293 63.8
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 2.7e-74 283.9 293 63.1
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 5.9e-74 282.7 324 59.0
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 5.9e-74 282.7 324 58.6
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 2.5e-72 277.3 227 66.1
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 3.6e-71 273.5 216 69.0
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 3.0e-70 270.4 229 63.3
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 3.7e-68 263.5 338 48.8
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 2.4e-67 260.8 324 56.8
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 2.4e-67 260.8 320 50.6
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 2.4e-67 260.8 229 72.9
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 7.0e-67 259.2 181 70.2
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 1.6e-66 258.1 283 53.7
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 1.0e-65 255.4 324 56.2
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 3.8e-65 253.4 291 52.6
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 1.2e-63 248.4 313 47.0
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 2.1e-63 247.7 334 46.7
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 4.4e-61 240.0 213 76.1
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 8.3e-60 235.7 213 72.3
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 1.0e-57 228.8 194 61.9
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 2.3e-57 227.6 194 60.3
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 1.9e-56 224.6 135 90.4
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 4.0e-54 216.9 257 50.2
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 3.7e-52 210.3 221 52.5
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 2.3e-46 191.0 157 64.3
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 9.8e-45 185.7 187 68.4
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 7.0e-43 179.5 155 60.0
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.2e-43 179.1 178 59.6
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.2e-42 178.7 178 59.6
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.2e-42 178.7 178 59.6
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.0e-42 177.9 178 59.6
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.5e-42 177.2 178 59.0
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.5e-42 177.2 178 59.0
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.5e-42 177.2 178 59.0
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.8e-42 176.0 178 59.0
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.3e-41 175.3 178 58.4
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.9e-41 173.7 160 61.9
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.0e-41 173.3 190 55.3
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.6e-41 172.9 178 57.9
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 8.6e-41 172.6 178 57.9
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.9e-40 171.4 178 58.4
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.8e-39 167.5 173 58.4
MELO3C019779.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.4e-38 165.2 181 51.9
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 3.1e-38 164.1 276 40.9
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.4e-37 160.2 178 56.7
RcHm_v2.0_Chr3g0484501 Rosa chinensis HOM05D003639 ORTHO05D004246 4.6e-34 150.2 147 53.1
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 4.3e-32 143.7 174 51.1
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 1.4e-30 138.7 137 54.0
RcHm_v2.0_Chr3g0484401 Rosa chinensis HOM05D003639 ORTHO05D004246 1.4e-30 138.7 103 65.0
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-30 137.9 178 50.6
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 3.1e-30 137.5 119 68.1
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 8.9e-30 136.0 298 34.9
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.1e-27 129.0 139 59.0
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 6.6e-25 119.8 77 74.0
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 1.1e-24 119.0 118 59.3
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 5.8e-21 106.7 216 32.9
AL3G43260 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 1.7e-20 105.1 82 63.4
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.0e-17 95.9 87 65.5
Cre16.g662800 Chlamydomonas reinhardtii HOM05D003639 ORTHO05D004246 1.6e-15 88.6 132 40.2
Atru.chr1.1192 Acer truncatum HOM05D003639 ORTHO05D004246 2.4e-14 84.7 93 80.6
Lj4A34T49 Lonicera japonica HOM05D003639 ORTHO05D004246 4.0e-14 84.0 93 83.9
Atru.chr6.1380 Acer truncatum HOM05D003639 ORTHO05D004246 2.2e-12 78.2 93 44.1
QL04p089213 Quercus lobata HOM05D003639 ORTHO05D004246 4.9e-12 77.0 116 49.1
PRCOL_00003365 Prasinoderma coloniale HOM05D003639 ORTHO05D004246 1.6e-10 72.0 189 32.8
QL05p082994 Quercus lobata HOM05D003639 ORTHO05D004246 2.3e-09 68.2 171 36.8
Manes.08G135900 Manihot esculenta HOM05D000836 ORTHO05D000709 2.1e-07 61.6 103 34.0
Haze_19776 Corylus avellana HOM05D003639 ORTHO05D004246 6.2e-07 60.1 64 50.0
MBI07_g31313_MAGBIO Magnolia biondii HOM05D000836 ORTHO05D000709 6.2e-07 60.1 81 40.7
ATR0794G100 Amborella trichopoda HOM05D000836 ORTHO05D000709 8.1e-07 59.7 81 37.0
AUR62008907 Chenopodium quinoa HOM05D000836 ORTHO05D000709 1.8e-06 58.5 89 37.1
Nn3g19956 Nelumbo nucifera HOM05D000836 ORTHO05D000709 1.8e-06 58.5 81 38.3
EL10Ac7g17827 Beta vulgaris HOM05D000836 ORTHO05D000709 2.4e-06 58.2 90 37.8
Manes.09G151600 Manihot esculenta HOM05D000836 ORTHO05D000709 5.3e-06 57.0 69 42.0
RcHm_v2.0_Chr2g0089711 Rosa chinensis HOM05D000836 ORTHO05D000709 5.3e-06 57.0 102 32.4
FvH4_1g04170 Fragaria vesca HOM05D000836 ORTHO05D000709 6.9e-06 56.6 81 38.3
FAN19G2864 Fragaria x ananassa HOM05D000836 ORTHO05D000709 6.9e-06 56.6 81 38.3
FAN23G0885 Fragaria x ananassa HOM05D000836 ORTHO05D000709 6.9e-06 56.6 81 38.3
FAN28G0524 Fragaria x ananassa HOM05D000836 ORTHO05D000709 6.9e-06 56.6 81 38.3
BcaNung04071 Brassica carinata HOM05D003639 ORTHO05D004246 9.0e-06 56.2 95 62.1


User provided reference genes

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