Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14955 Trifolium pratense HOM05D029028 ORTHO05D030699 0.0e+00 1412.9 722 100.0
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 2.2e-153 547.0 471 66.9
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 6.9e-147 525.4 472 65.0
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 3.7e-140 503.1 487 61.2
Glyma.07G252100 Glycine max HOM05D000104 ORTHO05D005604 1.3e-137 494.6 463 62.0
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 1.2e-135 488.0 466 60.9
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 5.1e-134 482.6 464 61.2
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 8.8e-118 428.7 470 58.3
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 2.6e-109 400.6 389 61.2
arahy.Tifrunner.gnm1.ann1.Z03QFY Arachis hypogaea HOM05D000104 ORTHO05D005604 2.3e-97 360.9 396 57.6
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 6.6e-97 359.4 394 57.6
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 1.8e-94 351.3 443 48.3
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 5.9e-90 336.3 475 47.6
arahy.Tifrunner.gnm1.ann1.Q30CKZ Arachis hypogaea HOM05D000104 ORTHO05D005604 1.0e-89 335.5 393 55.7
arahy.Tifrunner.gnm1.ann1.N8S0IJ Arachis hypogaea HOM05D000104 ORTHO05D005604 9.5e-88 328.9 393 55.2
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 6.8e-86 322.8 461 46.0
Haze_01047 Corylus avellana HOM05D000104 ORTHO05D005604 2.0e-85 321.2 534 42.3
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 2.6e-85 320.9 528 43.4
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.4e-83 315.1 438 46.8
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 9.2e-83 312.4 568 40.3
CANSAT78G1941 Cannabis sativa HOM05D000104 ORTHO05D005604 6.6e-81 306.2 440 44.8
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 4.3e-80 303.5 472 44.9
FAN07G2961 Fragaria x ananassa HOM05D000104 ORTHO05D005604 2.1e-79 301.2 502 42.0
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 2.2e-76 291.2 394 47.7
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 8.3e-76 289.3 440 43.9
arahy.Tifrunner.gnm1.ann1.Q10S7I Arachis hypogaea HOM05D000104 ORTHO05D005604 1.9e-75 288.1 396 47.5
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 3.2e-75 287.3 529 40.8
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 1.6e-71 275.0 558 38.2
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 2.3e-70 271.2 547 38.6
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 5.2e-70 270.0 552 37.7
COL.COLO4_25219 Corchorus olitorius HOM05D000104 ORTHO05D005604 8.9e-70 269.2 547 38.8
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 2.2e-68 264.6 544 37.5
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 8.4e-68 262.7 551 37.7
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.4e-67 261.9 547 37.7
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 9.2e-67 259.2 387 47.5
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 3.9e-65 253.8 526 39.9
Dinv36280 Davidia involucrata HOM05D000104 ORTHO05D005604 3.6e-63 247.3 332 47.9
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 3.6e-63 247.3 438 40.2
TPR.G14627 Trifolium pratense HOM05D000319 ORTHO05D000903 2.6e-61 241.1 215 65.1
Gohir.A09G233050 Gossypium hirsutum HOM05D000104 ORTHO05D005604 9.9e-61 239.2 468 38.5
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 2.9e-60 237.7 434 41.5
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 1.9e-59 235.0 435 41.8
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 7.1e-59 233.0 398 43.0
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 1.5e-56 225.3 517 37.3
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 5.6e-56 223.4 312 47.4
TAR365G0556 Trochodendron aralioides HOM05D000104 ORTHO05D005604 6.2e-55 219.9 371 41.5
ClCG05G005740 Citrullus lanatus HOM05D000104 ORTHO05D005604 7.6e-53 213.0 232 55.2
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 1.7e-52 211.8 272 50.0
CsaV3_3G014070 Cucumis sativus L. HOM05D000104 ORTHO05D005604 3.8e-52 210.7 270 50.0
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 8.4e-52 209.5 256 52.3
FAN12G1949 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.9e-51 208.4 380 38.7
CiPaw.02G087300 Carya illinoinensis HOM05D000104 ORTHO05D005604 2.4e-51 208.0 241 53.5
TAR362G0998 Trochodendron aralioides HOM05D000104 ORTHO05D005604 2.3e-49 201.4 368 39.4
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 5.1e-49 200.3 328 42.1
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 6.6e-49 199.9 553 32.5
Cpa.g.sc16.100 Carica papaya HOM05D000104 ORTHO05D005604 2.1e-47 194.9 268 47.4
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 4.8e-47 193.7 557 33.0
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 1.4e-46 192.2 332 43.4
MD16G1176400 Malus domestica HOM05D000104 ORTHO05D005604 1.8e-46 191.8 389 37.5
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 3.1e-46 191.0 323 39.9
MD13G1174700 Malus domestica HOM05D000104 ORTHO05D005604 1.2e-45 189.1 389 37.3
Actinidia16312 Actinidia chinensis HOM05D000104 ORTHO05D005604 3.4e-45 187.6 335 41.2
vmacro04191 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 4.5e-45 187.2 439 34.6
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 8.4e-44 183.0 332 41.0
TPR.G28718 Trifolium pratense HOM05D029028 ORTHO05D030699 1.1e-43 182.6 230 42.6
TPR.G22704 Trifolium pratense HOM05D029028 ORTHO05D030699 1.2e-42 179.1 289 44.3
AUR62042660 Chenopodium quinoa HOM05D000104 ORTHO05D005604 8.7e-41 172.9 306 41.5
TPR.G24758 Trifolium pratense HOM05D029028 ORTHO05D030699 9.6e-40 169.5 346 34.1
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 3.7e-39 167.5 245 48.6
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 3.7e-39 167.5 248 48.4
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 4.0e-38 164.1 404 34.4
EL10Ac3g06521 Beta vulgaris HOM05D000104 ORTHO05D005604 9.0e-38 162.9 200 51.0
CSS0020473 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005604 4.5e-37 160.6 269 41.6
Ah.13g074440 Amaranthus hybridus HOM05D000404 ORTHO05D005791 5.8e-37 160.2 292 40.4
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 1.7e-36 158.7 262 45.8
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 1.4e-35 155.6 259 44.4
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 2.5e-35 154.8 243 47.3
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 2.7e-34 151.4 231 47.2
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 3.5e-34 151.0 320 37.2
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 7.9e-34 149.8 237 46.4
Lj1A357G13 Lonicera japonica HOM05D000104 ORTHO05D005604 1.3e-33 149.1 323 35.3
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 3.0e-33 147.9 246 43.5
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 3.0e-33 147.9 237 46.0
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 5.1e-33 147.1 365 35.3
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 5.1e-33 147.1 322 39.4
Rhsim13G0223800 Rhododendron simsii HOM05D000104 ORTHO05D005604 3.3e-32 144.4 308 37.3
BcaB01g03644 Brassica carinata HOM05D000104 ORTHO05D005604 2.1e-31 141.7 316 38.9
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 2.1e-31 141.7 242 42.1
AUR62040388 Chenopodium quinoa HOM05D000104 ORTHO05D005604 1.4e-27 129.0 250 40.0
MBI19_g34717_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 3.5e-26 124.4 351 32.5
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 6.1e-26 123.6 345 32.8
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 1.1e-24 119.4 143 50.3
TAR365G0890 Trochodendron aralioides HOM05D000104 ORTHO05D005604 1.5e-24 119.0 323 32.5
HPP92_007983 Vanilla planifolia HOM05D002012 ORTHO05D001992 1.9e-24 118.6 392 31.4
Os06g0255200 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D005604 5.7e-24 117.1 354 32.8
Ah.04g153970 Amaranthus hybridus HOM05D000104 ORTHO05D005604 3.7e-23 114.4 240 37.1
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 3.1e-22 111.3 145 46.2
Cfa015504 Carpinus fangiana HOM05D000104 ORTHO05D005604 4.1e-22 110.9 116 57.8
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 6.9e-22 110.2 140 46.4
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 5.0e-20 104.0 259 36.3
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 1.4e-19 102.4 216 38.4
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 3.2e-19 101.3 369 31.4
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 4.2e-19 100.9 167 43.1
Hma1.2p1_3230F.1_g334250 Hydrangea macrophylla HOM05D000104 ORTHO05D005604 7.2e-19 100.1 251 32.7
Cc00_g33690 Coffea canephora HOM05D000104 ORTHO05D005604 2.7e-18 98.2 93 59.1
Nitab4.5_0006542g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005604 2.7e-18 98.2 222 37.4
AL4G21810 Arabidopsis lyrata HOM05D000104 ORTHO05D005604 3.6e-18 97.8 188 39.4
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 3.6e-18 97.8 116 50.9
Lj1C354G8 Lonicera japonica HOM05D000104 ORTHO05D005604 1.4e-17 95.9 161 39.8
SHI00291 Sapria himalayana HOM05D000104 ORTHO05D005604 3.9e-17 94.4 171 42.1
CDE05G2634 Ceratophyllum demersum HOM05D000104 ORTHO05D005604 6.7e-17 93.6 249 34.9
unitig_32.g11765 Utricularia gibba HOM05D000186 ORTHO05D002329 5.7e-16 90.5 134 43.3
Nitab4.5_0004806g0040 Nicotiana tabacum HOM05D000455 ORTHO05D000434 1.7e-15 89.0 97 52.6
ECA233G1169 Erigeron canadensis HOM05D000104 ORTHO05D005604 3.7e-15 87.8 182 39.6
Nitab4.5_0002766g0090 Nicotiana tabacum HOM05D000455 ORTHO05D010375 4.1e-14 84.3 90 50.0
HanXRQChr17g0554821 Helianthus annuus HOM05D000104 ORTHO05D005604 6.9e-14 83.6 176 38.6
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 6.9e-14 83.6 263 32.7
ATR1101G061 Amborella trichopoda HOM05D000104 ORTHO05D005604 3.4e-13 81.3 119 47.1
BcaB02g10070 Brassica carinata HOM05D000484 ORTHO05D005604 7.9e-10 70.1 70 55.7
arahy.Tifrunner.gnm1.ann1.TG6BII Arachis hypogaea HOM05D000181 ORTHO05D014369 1.8e-09 68.9 104 46.2
Medtr3g044960 Medicago truncatula HOM05D004090 ORTHO05D002871 1.1e-08 66.2 135 27.4
arahy.Tifrunner.gnm1.ann1.E69ZFU Arachis hypogaea HOM05D000104 ORTHO05D005604 3.3e-08 64.7 50 66.0
arahy.Tifrunner.gnm1.ann1.0XZV5D Arachis hypogaea HOM05D000846 ORTHO05D001340 2.2e-07 62.0 38 84.2
MBI13_g06829_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 2.2e-07 62.0 36 83.3
TAR365G0692 Trochodendron aralioides HOM05D000104 ORTHO05D005604 2.8e-07 61.6 91 46.2
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 4.8e-07 60.8 206 26.2
FAN12G0301 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.8e-06 58.9 35 82.9


User provided reference genes

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