Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14063 Trifolium pratense HOM05D004026 ORTHO05D004712 3.9e-64 248.1 131 100.0
Medtr4g083170 Medicago truncatula HOM05D004026 ORTHO05D004712 5.6e-47 191.0 99 99.0
Psat7g153480 Pisum sativum HOM05D004026 ORTHO05D004712 1.2e-46 189.9 99 98.0
TPR.G8174 Trifolium pratense HOM05D004026 ORTHO05D004712 1.6e-46 189.5 99 98.0
Ah.05g167900 Amaranthus hybridus HOM05D004026 ORTHO05D004712 6.2e-46 187.6 99 97.0
EL10Ac1g01537 Beta vulgaris HOM05D004026 ORTHO05D004712 1.4e-45 186.4 99 96.0
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea HOM05D004026 ORTHO05D004712 2.4e-45 185.7 99 96.0
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea HOM05D004026 ORTHO05D004712 2.4e-45 185.7 99 96.0
MBI09_g18621_MAGBIO Magnolia biondii HOM05D004026 ORTHO05D004712 2.4e-45 185.7 99 96.0
Glyma.16G167900 Glycine max HOM05D004026 ORTHO05D004712 3.1e-45 185.3 96 99.0
Glyma.02G082300 Glycine max HOM05D004026 ORTHO05D004712 4.0e-45 184.9 96 97.9
Phvul.004G095700 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 4.0e-45 184.9 96 97.9
Sabra05G0146400 Salix brachista HOM05D004026 ORTHO05D004712 4.0e-45 184.9 101 96.0
Cpa.g.sc2145.2 Carica papaya HOM05D004026 ORTHO05D004712 6.8e-45 184.1 96 97.9
Dinv41090 Davidia involucrata HOM05D004026 ORTHO05D004712 6.8e-45 184.1 96 97.9
Migut.N03226 Erythranthe guttata HOM05D004026 ORTHO05D004712 6.8e-45 184.1 97 96.9
Eucgr.F02710 Eucalyptus grandis HOM05D004026 ORTHO05D004712 6.8e-45 184.1 103 94.2
Oeu046026.1 Olea europaea HOM05D004026 ORTHO05D004712 6.8e-45 184.1 97 96.9
Hund26698 Selenicereus undatus HOM05D004026 ORTHO05D004712 6.8e-45 184.1 96 97.9
Duzib116G0179 Durio zibethinus HOM05D004026 ORTHO05D004712 8.9e-45 183.7 96 97.9
Migut.C01015 Erythranthe guttata HOM05D004026 ORTHO05D004712 8.9e-45 183.7 97 95.9
FvH4_2g13861 Fragaria vesca HOM05D004026 ORTHO05D004712 8.9e-45 183.7 96 97.9
FAN15G1801 Fragaria x ananassa HOM05D004026 ORTHO05D004712 8.9e-45 183.7 96 97.9
FAN20G2578 Fragaria x ananassa HOM05D004026 ORTHO05D004712 8.9e-45 183.7 96 97.9
FAN27G2615 Fragaria x ananassa HOM05D004026 ORTHO05D004712 8.9e-45 183.7 96 97.9
Lalb_Chr03g0035271 Lupinus albus HOM05D004026 ORTHO05D004712 8.9e-45 183.7 96 97.9
Nn5g28727 Nelumbo nucifera HOM05D004026 ORTHO05D004712 8.9e-45 183.7 96 96.9
RcHm_v2.0_Chr6g0275571 Rosa chinensis HOM05D004026 ORTHO05D004712 8.9e-45 183.7 96 97.9
Zm00001eb146730 Zea mays HOM05D004026 ORTHO05D004712 8.9e-45 183.7 99 93.9
FAN24G0951 Fragaria x ananassa HOM05D004026 ORTHO05D004712 1.2e-44 183.3 96 96.9
Gohir.A05G243000 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.2e-44 183.3 96 96.9
Gohir.D05G244500 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.2e-44 183.3 96 96.9
Gorai.009G253600 Gossypium raimondii HOM05D004026 ORTHO05D004712 1.2e-44 183.3 96 96.9
Lj2g0026454 Lotus japonicus HOM05D004026 ORTHO05D004712 1.2e-44 183.3 95 98.9
Lalb_Chr01g0009621 Lupinus albus HOM05D004026 ORTHO05D004712 1.2e-44 183.3 95 98.9
PGR042G0059 Punica granatum HOM05D004026 ORTHO05D004712 1.2e-44 183.3 96 96.9
Cc10_g14760 Coffea canephora HOM05D004026 ORTHO05D004712 1.5e-44 183.0 99 93.9
Gorai.002G055500 Gossypium raimondii HOM05D004026 ORTHO05D004712 1.5e-44 183.0 96 96.9
PSO541G1854 Papaver somniferum HOM05D004026 ORTHO05D004712 1.5e-44 183.0 95 97.9
PSO675G7538 Papaver somniferum HOM05D004026 ORTHO05D004712 1.5e-44 183.0 95 97.9
THA.LOC104813712 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 1.5e-44 183.0 95 97.9
Actinidia06668 Actinidia chinensis HOM05D004026 ORTHO05D004712 2.0e-44 182.6 97 94.8
CANSAT25G0019 Cannabis sativa HOM05D004026 ORTHO05D004712 2.0e-44 182.6 96 96.9
MD10G1024500 Malus domestica HOM05D004026 ORTHO05D004712 2.0e-44 182.6 96 97.9
Manes.18G091400 Manihot esculenta HOM05D004026 ORTHO05D004712 2.0e-44 182.6 96 96.9
Nitab4.5_0000964g0020 Nicotiana tabacum HOM05D004026 ORTHO05D004712 2.0e-44 182.6 97 93.8
Phvul.004G129000 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 2.0e-44 182.6 96 96.9
Potri.005G191600 Populus trichocarpa HOM05D004026 ORTHO05D004712 2.0e-44 182.6 96 96.9
Atru.chr13.2143 Acer truncatum HOM05D004026 ORTHO05D004712 2.6e-44 182.2 96 95.8
Ciclev10002950m.g Citrus clementina HOM05D004026 ORTHO05D004712 2.6e-44 182.2 96 95.8
Lj1g0021939 Lotus japonicus HOM05D004026 ORTHO05D004712 2.6e-44 182.2 95 97.9
MD05G1024000 Malus domestica HOM05D004026 ORTHO05D004712 2.6e-44 182.2 96 96.9
Manes.02G178900 Manihot esculenta HOM05D004026 ORTHO05D004712 2.6e-44 182.2 96 96.9
Nn1g06097 Nelumbo nucifera HOM05D004026 ORTHO05D004712 2.6e-44 182.2 96 95.8
Prupe.8G028400 Prunus persica HOM05D004026 ORTHO05D004712 2.6e-44 182.2 96 95.8
TAR628G0743 Trochodendron aralioides HOM05D004026 ORTHO05D004712 2.6e-44 182.2 96 95.8
Sabra02G0054100 Salix brachista HOM05D004026 ORTHO05D004712 3.4e-44 181.8 96 96.9
SalBow6G5104 Salvia bowleyana HOM05D004026 ORTHO05D004712 3.4e-44 181.8 97 94.8
THA.LOC104812039 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 3.4e-44 181.8 95 96.8
TWI34G0684 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 3.4e-44 181.8 96 96.9
Gohir.A02G112705 Gossypium hirsutum HOM05D004026 ORTHO05D004712 4.4e-44 181.4 96 95.8
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 4.4e-44 181.4 96 96.9
Thecc.08G150600 Theobroma cacao HOM05D004026 ORTHO05D004712 4.4e-44 181.4 96 95.8
ECA236G1806 Erigeron canadensis HOM05D004026 ORTHO05D004712 5.8e-44 181.0 96 95.8
HanXRQChr06g0182631 Helianthus annuus HOM05D004026 ORTHO05D004712 5.8e-44 181.0 96 95.8
HanXRQChr11g0339331 Helianthus annuus HOM05D004026 ORTHO05D004712 5.8e-44 181.0 96 95.8
Lsat_1_v5_gn_7_71840 Lactuca sativa HOM05D004026 ORTHO05D004712 5.8e-44 181.0 96 95.8
QL02p024017 Quercus lobata HOM05D004026 ORTHO05D004712 5.8e-44 181.0 95 95.8
Sed0019016 Sechium edule HOM05D004026 ORTHO05D004712 5.8e-44 181.0 96 95.8
TAR381G0202 Trochodendron aralioides HOM05D004026 ORTHO05D004712 5.8e-44 181.0 96 94.8
Potri.002G068800 Populus trichocarpa HOM05D004026 ORTHO05D004712 7.6e-44 180.6 96 95.8
Rhsim06G0071000 Rhododendron simsii HOM05D004026 ORTHO05D004712 7.6e-44 180.6 97 93.8
Rhsim06G0135800 Rhododendron simsii HOM05D004026 ORTHO05D004712 7.6e-44 180.6 97 93.8
unitig_744.g24567 Utricularia gibba HOM05D004026 ORTHO05D004712 7.6e-44 180.6 97 93.8
Gohir.D03G060607 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.3e-43 179.9 96 95.8
Peaxi162Scf00025g02218 Petunia axillaris HOM05D004026 ORTHO05D004712 1.3e-43 179.9 98 94.9
Peaxi162Scf00583g00530 Petunia axillaris HOM05D004026 ORTHO05D004712 1.3e-43 179.9 99 91.9
TAR625G0830 Trochodendron aralioides HOM05D004026 ORTHO05D004712 1.3e-43 179.9 96 93.8
CAN.G249.12 Capsicum annuum HOM05D004026 ORTHO05D004712 1.7e-43 179.5 97 92.8
CDE06G1840 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 1.7e-43 179.5 96 93.8
CDE08G0955 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 1.7e-43 179.5 96 93.8
ClCG08G006960 Citrullus lanatus HOM05D004026 ORTHO05D004712 1.7e-43 179.5 96 94.8
Sed0010346 Sechium edule HOM05D004026 ORTHO05D004712 1.7e-43 179.5 96 94.8
Solyc11g005370.2 Solanum lycopersicum HOM05D004026 ORTHO05D004712 1.7e-43 179.5 97 92.8
Sopen11g001380 Solanum pennellii HOM05D004026 ORTHO05D004712 1.7e-43 179.5 97 92.8
PGSC0003DMG400003988 Solanum tuberosum HOM05D004026 ORTHO05D004712 1.7e-43 179.5 97 92.8
CSS0019157 Camellia sinensis var. sinensis HOM05D004026 ORTHO05D004712 2.2e-43 179.1 95 95.8
Duzib093G0799 Durio zibethinus HOM05D004026 ORTHO05D004712 2.2e-43 179.1 101 93.1
QL09p017237 Quercus lobata HOM05D004026 ORTHO05D004712 2.2e-43 179.1 94 95.7
unitig_21.g20177 Utricularia gibba HOM05D004026 ORTHO05D004712 2.2e-43 179.1 97 92.8
HPP92_016150 Vanilla planifolia HOM05D004026 ORTHO05D004712 2.2e-43 179.1 95 94.7
Dinv25856 Davidia involucrata HOM05D004026 ORTHO05D004712 2.9e-43 178.7 96 93.8
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 6.4e-43 177.6 97 91.8
Mapoly0008s0084 Marchantia polymorpha HOM05D004026 ORTHO05D004712 6.4e-43 177.6 96 92.7
MELO3C008344.2 Cucumis melo HOM05D004026 ORTHO05D004712 8.4e-43 177.2 96 93.8
Os01g0866700 Oryza sativa ssp. japonica HOM05D004026 ORTHO05D004712 8.4e-43 177.2 93 96.8
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05D004026 ORTHO05D004712 1.1e-42 176.8 95 93.7
Pp3c24_12260 Physcomitrium patens HOM05D004026 ORTHO05D004712 1.1e-42 176.8 96 91.7
Aa31LG4G6900 Aethionema arabicum HOM05D004026 ORTHO05D004712 1.9e-42 176.0 95 91.6
Dinv09936 Davidia involucrata HOM05D004026 ORTHO05D004712 1.9e-42 176.0 97 90.7
Aqoxy5G02098 Aquilegia oxysepala HOM05D004026 ORTHO05D004712 3.2e-42 175.3 96 92.7
SEGI_01220 Sequoiadendron giganteum HOM05D004026 ORTHO05D004712 4.2e-42 174.9 96 90.6
DCAR_014432 Daucus carota HOM05D004026 ORTHO05D004712 5.4e-42 174.5 93 95.7
Aa31LG7G5300 Aethionema arabicum HOM05D004026 ORTHO05D004712 1.6e-41 172.9 95 88.4
Sp1g18830 Schrenkiella parvula HOM05D004026 ORTHO05D004712 2.7e-41 172.2 95 88.4
ATR0772G183 Amborella trichopoda HOM05D004026 ORTHO05D004712 3.5e-41 171.8 96 89.6
AT1G21190 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 3.5e-41 171.8 95 87.4
AT1G76860 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 3.5e-41 171.8 94 90.4
AL1G34240 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 4.6e-41 171.4 93 89.2
AL2G36980 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 7.8e-41 170.6 94 89.4
Carub.0001s2062 Capsella rubella HOM05D004026 ORTHO05D004712 7.8e-41 170.6 95 86.3
Haze_17748 Corylus avellana HOM05D004026 ORTHO05D004712 7.8e-41 170.6 113 81.4
CARHR070370 Cardamine hirsuta HOM05D004026 ORTHO05D004712 1.0e-40 170.2 93 89.2
SMO169G0100 Selaginella moellendorffii HOM05D004026 ORTHO05D004712 1.0e-40 170.2 96 87.5
BcaB02g07078 Brassica carinata HOM05D004026 ORTHO05D004712 2.3e-40 169.1 95 87.4
BcaC08g45508 Brassica carinata HOM05D004026 ORTHO05D004712 2.3e-40 169.1 95 87.4
A07p28330 Brassica napus HOM05D004026 ORTHO05D004712 2.3e-40 169.1 95 87.4
C06p31770 Brassica napus HOM05D004026 ORTHO05D004712 2.3e-40 169.1 95 87.4
BolC6t38306H Brassica oleracea HOM05D004026 ORTHO05D004712 2.3e-40 169.1 106 81.1
BraA07t30470Z Brassica rapa HOM05D004026 ORTHO05D004712 2.3e-40 169.1 95 87.4
CARHR021640 Cardamine hirsuta HOM05D004026 ORTHO05D004712 2.3e-40 169.1 93 88.2
BcaB07g32108 Brassica carinata HOM05D004026 ORTHO05D004712 3.9e-40 168.3 95 86.3
A06p17220 Brassica napus HOM05D004026 ORTHO05D004712 3.9e-40 168.3 95 86.3
BraA06t24824Z Brassica rapa HOM05D004026 ORTHO05D004712 3.9e-40 168.3 95 86.3
Carub.0002s2374 Capsella rubella HOM05D004026 ORTHO05D004712 8.7e-40 167.2 95 86.3
Thhalv10019321m.g Eutrema salsugineum HOM05D004026 ORTHO05D004712 1.1e-39 166.8 93 87.1
BcaC03g15707 Brassica carinata HOM05D004026 ORTHO05D004712 1.5e-39 166.4 92 88.0
A02p20950 Brassica napus HOM05D004026 ORTHO05D004712 1.5e-39 166.4 92 88.0
C02p34120 Brassica napus HOM05D004026 ORTHO05D004712 1.5e-39 166.4 92 88.0
BolC2t09428H Brassica oleracea HOM05D004026 ORTHO05D004712 1.5e-39 166.4 92 88.0
BraA02t07126Z Brassica rapa HOM05D004026 ORTHO05D004712 1.5e-39 166.4 92 88.0
Sp5g31990 Schrenkiella parvula HOM05D004026 ORTHO05D004712 1.9e-39 166.0 92 88.0
BcaC08g47186 Brassica carinata HOM05D004026 ORTHO05D004712 2.5e-39 165.6 95 85.3
A07p42450 Brassica napus HOM05D004026 ORTHO05D004712 2.5e-39 165.6 95 85.3
C06p51010 Brassica napus HOM05D004026 ORTHO05D004712 2.5e-39 165.6 95 85.3
BolC6t40126H Brassica oleracea HOM05D004026 ORTHO05D004712 2.5e-39 165.6 95 85.3
BraA07t31770Z Brassica rapa HOM05D004026 ORTHO05D004712 2.5e-39 165.6 95 85.3
BcaB05g25014 Brassica carinata HOM05D004026 ORTHO05D004712 7.3e-39 164.1 92 87.0
MCO12G407 Micromonas commoda HOM05D004026 ORTHO05D004712 1.8e-37 159.5 93 82.8
Cre16.g662300 Chlamydomonas reinhardtii HOM05D004026 ORTHO05D004712 2.4e-37 159.1 97 79.4
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 7.6e-36 154.1 94 87.2
BolC5t30689H Brassica oleracea HOM05D004026 ORTHO05D004712 1.7e-35 152.9 106 75.5
AUR62026713 Chenopodium quinoa HOM05D004026 ORTHO05D004712 1.1e-34 150.2 99 81.8
BcaC05g26025 Brassica carinata HOM05D004026 ORTHO05D004712 5.4e-34 147.9 106 73.6
Cfa018326 Carpinus fangiana HOM05D004026 ORTHO05D004712 1.2e-33 146.7 133 64.7
PRCOL_00001118 Prasinoderma coloniale HOM05D004026 ORTHO05D004712 4.6e-33 144.8 99 70.7
CsaV3_1G019700 Cucumis sativus L. HOM05D004026 ORTHO05D004712 1.0e-32 143.7 124 67.7
Ca_28109_v3 Cicer arietinum L. HOM05D004026 ORTHO05D004712 9.6e-31 137.1 72 97.2
GSVIVG01034520001 Vitis vinifera HOM05D004026 ORTHO05D004712 1.6e-30 136.3 75 92.0
AUR62013577 Chenopodium quinoa HOM05D004026 ORTHO05D004712 2.1e-30 136.0 72 95.8
MD10G1024600 Malus domestica HOM05D004026 ORTHO05D004712 1.8e-29 132.9 69 98.6
Prupe.3G148200 Prunus persica HOM05D004026 ORTHO05D004712 1.8e-29 132.9 69 98.6
Rhsim10G0141800 Rhododendron simsii HOM05D004026 ORTHO05D004712 1.8e-29 132.9 70 95.7
TWI60G1706 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 4.0e-29 131.7 69 97.1
CiPaw.16G013200 Carya illinoinensis HOM05D004026 ORTHO05D004712 9.0e-29 130.6 69 95.7
Nitab4.5_0000004g0160 Nicotiana tabacum HOM05D004026 ORTHO05D004712 9.0e-29 130.6 70 92.9
CsaV3_6G005290 Cucumis sativus L. HOM05D004026 ORTHO05D004712 1.2e-28 130.2 121 65.3
Haze_27742 Corylus avellana HOM05D004026 ORTHO05D004712 9.9e-28 127.1 89 67.4
SalBow4G0880 Salvia bowleyana HOM05D004026 ORTHO05D004712 1.1e-26 123.6 93 73.1
Sc02g0004120 Simmondsia chinensis HOM05D004026 ORTHO05D004712 1.3e-24 116.7 61 95.1
SHI20484 Sapria himalayana HOM05D004026 ORTHO05D004712 8.7e-24 114.0 59 93.2
Nitab4.5_0010284g0010 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.1e-23 113.6 59 94.9
MSTRG.22373 Avicennia marina HOM05D004026 ORTHO05D004712 1.5e-23 113.2 68 80.9
Nitab4.5_0002064g0050 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.5e-23 113.2 58 93.1
C05p19920 Brassica napus HOM05D004026 ORTHO05D004712 2.4e-21 105.9 79 69.6
Glyma.10G120000 Glycine max HOM05D004026 ORTHO05D004712 4.0e-21 105.1 59 89.8
vmacro12827 Vaccinium macrocarpon HOM05D004026 ORTHO05D004712 2.0e-20 102.8 136 48.5
Oeu011940.1 Olea europaea HOM05D004026 ORTHO05D004712 7.6e-20 100.9 52 98.1
RcHm_v2.0_Chr6g0275581 Rosa chinensis HOM05D004026 ORTHO05D004712 3.8e-19 98.6 52 96.2
Cfa023910 Carpinus fangiana HOM05D004026 ORTHO05D004712 4.9e-19 98.2 85 55.3
CiPaw.15G016800 Carya illinoinensis HOM05D004026 ORTHO05D004712 5.5e-18 94.7 52 90.4
CBR_g88561 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-10 69.7 58 63.8
A09p54690 Brassica napus HOM05D001675 ORTHO05D000170 2.8e-06 55.8 101 32.7


User provided reference genes

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