Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 0.0e+00 1375.9 704 100.0
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 0.0e+00 1187.6 719 86.8
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 0.0e+00 1134.8 719 83.0
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 0.0e+00 1119.8 705 82.7
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 1.9e-295 1018.8 705 76.2
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 5.5e-290 1000.7 708 74.9
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 6.0e-289 997.3 708 74.4
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 1.9e-282 975.7 707 72.7
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 6.7e-280 967.2 712 70.9
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 7.4e-279 963.8 707 71.9
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 1.4e-269 932.9 706 70.3
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.4e-261 906.4 713 67.5
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.6e-260 902.9 713 67.5
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 9.7e-255 883.6 707 66.8
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.2e-199 700.7 716 53.8
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 3.5e-196 689.1 705 53.9
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 3.3e-194 682.6 722 52.4
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 1.3e-193 680.6 704 55.0
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 1.5e-191 673.7 705 52.8
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 1.9e-189 666.8 736 51.5
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.3e-187 660.6 706 54.5
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.9e-186 656.8 705 51.3
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 6.2e-185 651.7 703 53.9
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 3.5e-180 636.0 709 52.0
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 7.9e-180 634.8 707 52.2
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 2.5e-178 629.8 719 50.8
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 4.8e-177 625.5 769 49.5
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 6.9e-176 621.7 718 52.1
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 2.6e-175 619.8 706 51.0
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 2.6e-175 619.8 696 50.3
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 7.6e-175 618.2 710 49.9
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 4.9e-174 615.5 763 48.2
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 8.4e-174 614.8 717 49.4
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.1e-173 614.4 712 49.2
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 1.4e-173 614.0 717 51.9
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 1.9e-173 613.6 713 50.9
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 1.6e-172 610.5 719 49.8
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 2.1e-172 610.1 719 49.7
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.3e-171 607.4 753 48.1
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.9e-170 603.6 710 49.6
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 7.4e-170 601.7 679 51.4
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 9.7e-170 601.3 754 47.3
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 9.7e-170 601.3 717 49.0
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 1.6e-169 600.5 711 48.7
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 4.8e-169 599.0 736 49.7
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 6.3e-169 598.6 713 50.2
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 1.8e-168 597.0 710 49.2
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 2.4e-168 596.7 730 48.2
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 2.4e-168 596.7 729 49.4
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 9.0e-168 594.7 751 47.1
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.2e-167 594.3 765 48.5
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 4.5e-167 592.4 765 47.8
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 5.9e-167 592.0 705 48.2
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 1.0e-166 591.3 708 49.6
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 1.0e-166 591.3 715 48.4
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.3e-166 590.9 800 45.5
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 1.4e-163 580.9 729 47.5
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.3e-163 580.1 718 50.6
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 6.3e-161 572.0 771 47.1
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.8e-160 570.5 713 49.1
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 6.9e-160 568.5 707 47.2
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 7.7e-159 565.1 711 46.8
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.3e-158 564.3 712 49.2
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 1.7e-158 563.9 760 46.7
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 8.5e-158 561.6 719 46.3
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.4e-155 554.3 771 46.4
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 1.3e-153 547.7 713 48.7
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.1e-152 544.7 701 49.4
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.1e-152 544.7 705 45.7
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 1.0e-150 538.1 710 46.1
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 9.4e-149 531.6 767 43.5
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 3.6e-148 529.6 767 43.5
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 6.1e-148 528.9 740 45.1
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 6.1e-148 528.9 750 44.8
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 1.4e-147 527.7 715 47.3
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 3.3e-146 523.1 735 43.8
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 2.2e-145 520.4 709 45.8
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 6.3e-145 518.8 620 47.9
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 3.5e-143 513.1 707 44.8
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.0e-142 511.5 769 43.3
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 8.5e-142 508.4 724 43.5
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 1.5e-141 507.7 855 40.0
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 5.5e-141 505.8 745 42.7
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 3.6e-140 503.1 658 46.5
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.4e-139 501.1 756 42.2
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.0e-139 499.6 771 42.4
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 1.2e-135 488.0 692 43.4
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.5e-130 471.1 721 43.1
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.4e-128 464.5 742 41.1
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 5.9e-127 459.1 821 38.4
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.3e-126 457.2 709 41.5
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 4.0e-123 446.4 828 38.6
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.2e-122 444.9 700 41.9
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 1.7e-121 441.0 860 37.4
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 3.7e-121 439.9 859 37.3
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 2.4e-120 437.2 672 44.0
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.7e-119 433.7 711 39.8
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 2.3e-118 430.6 545 47.5
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 5.2e-115 419.5 743 39.4
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 6.4e-113 412.5 705 40.9
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 6.6e-110 402.5 823 37.3
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 4.7e-108 396.4 513 47.8
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 6.6e-102 375.9 740 37.3
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 1.1e-88 332.0 718 35.7
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 4.2e-88 330.1 718 35.1
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 3.1e-83 313.9 712 34.3
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 9.9e-82 308.9 693 33.5
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 5.8e-74 283.1 267 56.9
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.7e-73 281.6 673 34.3
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 3.8e-73 280.4 636 35.2
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 4.5e-66 256.9 735 28.8
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 5.5e-64 250.0 404 40.1
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 5.8e-58 229.9 884 27.6
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.8e-57 227.3 273 44.7
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 2.5e-56 224.6 715 28.5
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 3.9e-54 217.2 195 53.3
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 9.7e-53 212.6 323 42.4
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 7.7e-50 203.0 684 29.7
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 2.0e-45 188.3 701 26.4
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 6.9e-43 179.9 176 52.8
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 6.9e-43 179.9 176 52.8
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 2.1e-39 168.3 125 64.8
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 6.7e-38 163.3 291 35.1
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 1.2e-34 152.5 211 48.3
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 2.6e-34 151.4 128 60.2
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 5.9e-34 150.2 211 40.8
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 2.4e-27 128.3 82 73.2
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 6.5e-25 120.2 265 36.6
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.2e-21 109.4 103 52.4
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 9.1e-19 99.8 95 55.8
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 5.9e-18 97.1 112 48.2
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 3.2e-16 91.3 100 50.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.6e-15 89.0 160 41.9
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 3.6e-07 61.2 54 55.6


User provided reference genes

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