Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 1.4e-212 742.7 369 100.0
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 3.9e-146 521.9 306 84.3
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 1.0e-138 497.3 310 81.9
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 2.8e-120 436.0 295 75.9
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 4.8e-120 435.3 312 74.4
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 1.3e-117 427.2 327 69.7
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 3.0e-114 416.0 265 78.9
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 2.6e-110 402.9 252 81.7
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 2.6e-110 402.9 314 65.3
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 7.7e-110 401.4 318 67.6
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 6.5e-109 398.3 323 65.3
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 6.5e-109 398.3 383 57.7
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 8.5e-109 397.9 341 63.0
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 1.4e-108 397.1 325 66.8
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 1.9e-108 396.7 323 65.0
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 4.2e-108 395.6 321 65.7
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 5.5e-108 395.2 308 66.2
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 7.2e-108 394.8 317 64.0
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 2.1e-107 393.3 325 64.3
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 3.6e-107 392.5 306 67.6
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 1.4e-106 390.6 313 65.2
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 1.4e-106 390.6 313 65.2
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 1.8e-106 390.2 305 66.9
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 5.2e-106 388.7 329 65.0
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 2.2e-104 383.3 331 63.1
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 2.2e-104 383.3 326 63.5
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 2.8e-104 382.9 339 61.9
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 2.8e-104 382.9 339 61.9
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 8.2e-104 381.3 308 65.6
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 1.1e-103 380.9 296 66.9
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 1.4e-103 380.6 306 64.4
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 1.8e-103 380.2 312 64.1
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 2.4e-103 379.8 336 61.6
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 4.1e-103 379.0 306 65.7
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 5.3e-103 378.6 312 64.1
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 9.1e-103 377.9 338 61.2
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 1.2e-102 377.5 335 61.8
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 1.2e-102 377.5 312 65.7
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 1.6e-102 377.1 309 63.8
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 3.5e-102 375.9 322 62.7
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 3.5e-102 375.9 346 58.7
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 5.9e-102 375.2 322 62.7
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 5.9e-102 375.2 337 61.4
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 7.7e-102 374.8 328 61.6
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 1.0e-101 374.4 330 59.7
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 1.0e-101 374.4 311 63.3
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 1.3e-101 374.0 312 62.8
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 2.2e-101 373.2 309 65.0
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 1.1e-100 370.9 309 63.1
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 1.1e-100 370.9 317 62.5
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 1.1e-100 370.9 378 55.0
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 1.9e-100 370.2 331 59.5
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 2.5e-100 369.8 315 61.6
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 3.2e-100 369.4 326 59.8
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 4.2e-100 369.0 322 61.8
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 4.2e-100 369.0 322 61.8
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 4.2e-100 369.0 303 63.0
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 5.5e-100 368.6 373 54.7
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 7.2e-100 368.2 335 60.3
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 7.2e-100 368.2 321 60.4
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 1.2e-99 367.5 336 60.4
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 8.0e-99 364.8 312 61.2
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 1.0e-98 364.4 324 59.3
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 1.4e-98 364.0 327 59.0
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 1.8e-98 363.6 312 61.2
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 4.0e-98 362.5 344 57.3
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 4.0e-98 362.5 308 61.0
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 5.2e-98 362.1 307 62.9
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 2.0e-97 360.1 337 57.3
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 2.6e-97 359.8 312 60.9
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 2.6e-97 359.8 319 60.2
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 3.4e-97 359.4 333 59.5
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 4.4e-97 359.0 307 62.2
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 5.7e-97 358.6 304 61.2
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 5.7e-97 358.6 307 61.9
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 5.7e-97 358.6 307 62.9
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 7.5e-97 358.2 307 62.2
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 1.7e-96 357.1 326 58.3
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.7e-96 357.1 307 61.6
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 2.8e-96 356.3 432 48.8
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 4.8e-96 355.5 341 57.5
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 4.8e-96 355.5 311 60.8
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 4.8e-96 355.5 308 61.4
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 6.3e-96 355.1 213 81.7
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 8.3e-96 354.8 305 63.0
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 2.4e-95 353.2 313 60.1
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 4.1e-95 352.4 328 59.5
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 7.0e-95 351.7 306 61.1
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 2.7e-94 349.7 410 51.5
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.7e-93 347.1 218 76.6
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 3.8e-93 345.9 334 56.3
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 1.0e-90 337.8 351 55.6
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 4.0e-90 335.9 204 80.4
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 2.2e-88 330.1 409 48.2
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 5.5e-84 315.5 305 58.0
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 9.8e-81 304.7 298 56.7
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 1.7e-77 293.9 204 73.5
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 4.3e-76 289.3 290 55.9
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 1.5e-73 280.8 269 55.8
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 1.3e-72 277.7 331 49.2
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 1.1e-66 258.1 177 68.9
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 1.2e-65 254.6 337 45.4
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 5.4e-63 245.7 193 60.6
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 7.1e-63 245.4 150 78.0
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 1.3e-61 241.1 321 47.0
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 3.1e-58 229.9 312 41.7
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 4.0e-58 229.6 152 71.1
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 1.4e-55 221.1 143 75.5
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 4.1e-55 219.5 312 43.6
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 6.6e-53 212.2 260 47.7
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 1.2e-51 208.0 268 44.8
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 8.1e-43 178.7 121 71.9
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 2.3e-37 160.6 297 37.7
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 1.2e-33 148.3 180 48.3
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 1.7e-32 144.4 170 51.8
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 1.7e-32 144.4 309 34.0
Hma1.2p1_0113F.1_g055130 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 9.3e-31 138.7 93 75.3
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 6.7e-29 132.5 168 47.6
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 1.4e-26 124.8 191 36.6
Cre09.g388726 Chlamydomonas reinhardtii HOM05D005043 ORTHO05D006182 5.8e-25 119.4 238 32.4
CSS0039124 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 1.8e-21 107.8 70 77.1
PRCOL_00001017 Prasinoderma coloniale HOM05D005043 ORTHO05D006182 5.7e-20 102.8 175 36.6
SHI37131 Sapria himalayana HOM05D005043 ORTHO05D006182 7.4e-20 102.4 65 73.8
Medtr6g464930 Medicago truncatula HOM05D005043 ORTHO05D006182 4.1e-18 96.7 47 87.2
Medtr6g052000 Medicago truncatula HOM05D005043 ORTHO05D006182 1.1e-15 88.6 65 66.2
Medtr6g052005 Medicago truncatula HOM05D005043 ORTHO05D006182 7.1e-15 85.9 44 90.9
Psat3g076840 Pisum sativum HOM05D005043 ORTHO05D006182 3.5e-14 83.6 56 69.6
arahy.Tifrunner.gnm1.ann1.SEI0XU Arachis hypogaea HOM05D000735 ORTHO05D000838 4.6e-14 83.2 86 53.5
Psat3g076960 Pisum sativum HOM05D005043 ORTHO05D006182 1.3e-13 81.6 56 69.6
SEGI_01303 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 3.0e-13 80.5 57 66.7
Psat3g076920 Pisum sativum HOM05D005043 ORTHO05D006182 1.5e-12 78.2 56 66.1
SMO175G0006 Selaginella moellendorffii HOM05D017119 ORTHO05D006182 6.3e-11 72.8 188 28.7
PSO782G5034 Papaver somniferum HOM05D005043 ORTHO05D006182 1.8e-10 71.2 88 46.6
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 5.3e-10 69.7 43 76.7
Zm00001eb153930 Zea mays HOM05D005043 ORTHO05D006182 6.9e-10 69.3 162 32.7
PSO478G1721 Papaver somniferum HOM05D005043 ORTHO05D006182 4.5e-09 66.6 90 44.4
CSS0038261 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 2.2e-08 64.3 73 49.3
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 3.8e-08 63.5 61 52.5
Actinidia09808 Actinidia chinensis HOM05D005043 ORTHO05D006182 1.4e-07 61.6 107 45.8
RcHm_v2.0_Chr1g0352751 Rosa chinensis HOM05D005043 ORTHO05D006182 2.1e-06 57.8 33 72.7


User provided reference genes

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