Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 0.0e+00 1575.8 1052 100.0
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 0.0e+00 1140.6 1051 79.4
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 0.0e+00 1078.9 1053 77.4
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 1.4e-265 920.2 1044 63.3
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 9.1e-265 917.5 1065 67.2
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.7e-263 913.3 1059 67.7
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 1.4e-257 893.6 1059 67.0
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 4.3e-238 828.9 1057 64.7
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 4.0e-236 822.4 1059 62.9
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 1.2e-229 800.8 620 80.0
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 1.4e-225 787.3 1063 64.0
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 5.4e-209 732.3 1044 63.5
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 1.6e-208 730.7 648 70.4
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 2.7e-208 729.9 703 68.0
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.3e-207 726.9 676 68.0
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 5.6e-206 722.2 674 68.4
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 8.1e-205 718.4 675 68.1
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 9.9e-203 711.4 643 70.1
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 7.1e-201 705.3 675 69.2
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 3.5e-200 703.0 619 69.8
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 6.0e-200 702.2 695 65.8
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 1.0e-199 701.4 665 68.9
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 1.7e-199 700.7 761 64.1
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 1.9e-198 697.2 667 67.8
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.6e-197 694.1 613 72.4
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.6e-197 694.1 613 72.3
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.8e-197 693.3 570 71.4
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 6.9e-196 688.7 662 67.5
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 9.0e-196 688.3 726 65.8
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 9.0e-196 688.3 696 63.8
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 7.6e-195 685.3 645 67.6
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 7.6e-195 685.3 596 70.1
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 9.9e-195 684.9 570 72.5
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.3e-194 684.5 599 69.8
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 2.2e-194 683.7 641 66.9
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 8.4e-194 681.8 624 69.2
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 3.0e-191 673.3 532 76.9
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.1e-190 671.4 700 66.3
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.3e-190 669.8 699 65.8
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 9.6e-190 668.3 731 65.0
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.6e-189 667.5 753 63.9
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.6e-189 667.5 666 68.8
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 4.8e-189 666.0 710 61.4
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 6.2e-189 665.6 688 66.4
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 4.0e-188 662.9 664 65.4
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 2.6e-187 660.2 784 59.8
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 4.5e-187 659.4 665 62.9
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.3e-186 657.9 688 65.8
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.3e-186 657.9 565 70.1
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 9.3e-185 651.7 674 66.6
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 7.4e-182 642.1 645 62.9
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 9.6e-182 641.7 570 68.2
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.1e-181 640.6 688 64.8
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 6.2e-181 639.0 596 66.1
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 8.2e-181 638.6 611 61.9
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 2.4e-180 637.1 553 70.2
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 5.3e-180 636.0 595 63.9
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 6.9e-180 635.6 662 59.4
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 9.0e-180 635.2 579 69.4
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.0e-178 631.7 1063 51.4
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 4.9e-178 629.4 571 66.0
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.9e-178 629.4 640 62.7
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 9.3e-177 625.2 683 62.7
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.1e-176 624.0 697 60.4
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 1.0e-175 621.7 846 52.1
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.3e-175 620.5 691 60.1
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 6.7e-175 619.0 659 64.8
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 9.7e-174 615.1 493 71.8
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 1.3e-173 614.8 677 58.9
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 2.8e-173 613.6 585 65.5
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.1e-172 611.7 602 66.3
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 3.1e-172 610.1 521 67.2
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 6.9e-172 609.0 630 63.7
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.2e-171 608.2 610 63.8
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 1.5e-171 607.8 521 67.0
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 5.9e-171 605.9 649 62.2
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 1.3e-170 604.7 603 65.2
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 2.9e-170 603.6 608 64.8
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 6.5e-170 602.4 642 64.5
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.4e-169 601.3 688 60.9
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.5e-169 600.5 600 64.8
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 4.6e-168 596.3 613 63.6
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 6.1e-168 595.9 600 64.7
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.0e-167 595.1 488 70.3
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 2.3e-167 594.0 683 62.5
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 6.7e-167 592.4 683 62.4
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.0e-166 590.9 794 55.3
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 9.7e-166 588.6 627 62.0
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 9.7e-166 588.6 627 62.0
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 2.8e-165 587.0 627 61.9
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.1e-164 585.1 578 61.1
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.5e-163 581.3 599 62.9
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.9e-162 577.0 617 62.6
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 4.4e-158 563.1 597 60.6
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 4.8e-157 559.7 491 66.4
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 1.2e-155 555.1 716 56.1
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 8.5e-154 548.9 632 60.0
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 1.2e-152 545.0 632 59.8
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 6.1e-152 542.7 695 56.7
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 8.8e-151 538.9 601 60.7
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.8e-133 480.7 477 67.9
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 1.1e-121 442.2 504 56.2
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 3.1e-119 434.1 467 67.5
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.2e-118 432.2 603 52.4
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 3.0e-114 417.5 499 54.9
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.9e-109 401.0 289 69.6
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 3.2e-108 397.5 319 67.1
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 1.5e-89 335.5 537 46.7
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.8e-87 328.6 542 45.4
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 3.8e-85 320.9 207 73.9
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 9.3e-76 289.7 368 66.3
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 5.1e-74 283.9 505 45.1
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 1.9e-73 282.0 445 44.9
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 2.8e-72 278.1 504 44.6
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 4.9e-69 267.3 289 57.8
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 4.6e-67 260.8 331 61.0
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 6.0e-67 260.4 177 75.7
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 3.9e-66 257.7 276 66.7
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 2.5e-65 255.0 236 57.6
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 4.3e-65 254.2 275 60.0
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 8.2e-64 250.0 206 71.4
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.3e-56 226.1 178 68.0
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 8.8e-26 123.6 145 54.5
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 2.8e-24 118.6 71 77.5
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 2.2e-21 109.0 61 83.6
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 9.4e-20 103.6 88 56.8
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 2.1e-19 102.4 86 60.5
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 5.2e-18 97.8 87 66.7
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 6.8e-18 97.4 260 36.2
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 6.3e-16 90.9 99 56.6
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 5.4e-15 87.8 94 59.6
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 4.5e-14 84.7 414 25.1
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 1.0e-13 83.6 419 30.8
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 2.3e-13 82.4 77 77.9
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 3.8e-13 81.6 99 54.5
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 1.0e-10 73.6 137 60.6
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 1.7e-08 66.2 262 32.8
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 3.2e-07 62.0 94 54.3
A01p24780 Brassica napus HOM05D001023 ORTHO05D000912 5.4e-07 61.2 92 37.0
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 9.2e-07 60.5 97 37.1
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 9.2e-07 60.5 97 37.1
Mapoly0001s0473 Marchantia polymorpha HOM05D042108 ORTHO05D048733 9.2e-07 60.5 133 51.1
TWI81G0940 Tripterygium wilfordii HOM05D001023 ORTHO05D000912 2.0e-06 59.3 92 39.1
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 3.5e-06 58.5 93 36.6
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 3.5e-06 58.5 93 36.6
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 3.5e-06 58.5 97 36.1
CDE11G0185 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 3.5e-06 58.5 92 38.0
Aa31LG10G1640 Aethionema arabicum HOM05D001023 ORTHO05D000912 4.6e-06 58.2 104 34.6
BcaC04g23542 Brassica carinata HOM05D001023 ORTHO05D000912 4.6e-06 58.2 84 38.1
C09p07240 Brassica napus HOM05D001023 ORTHO05D000912 4.6e-06 58.2 84 38.1
Phvul.009G046200 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 4.6e-06 58.2 94 37.2
CDE02G1390 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 5.9e-06 57.8 92 38.0
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 5.9e-06 57.8 105 35.2
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 5.9e-06 57.8 97 34.0
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 5.9e-06 57.8 97 34.0
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 5.9e-06 57.8 97 34.0
Manes.10G105142 Manihot esculenta HOM05D001364 ORTHO05D001316 5.9e-06 57.8 102 33.3
Medtr3g092510 Medicago truncatula HOM05D001023 ORTHO05D000912 5.9e-06 57.8 94 36.2
Solyc06g053300.3 Solanum lycopersicum HOM05D001023 ORTHO05D000912 5.9e-06 57.8 92 38.0
Sopen06g018360 Solanum pennellii HOM05D001023 ORTHO05D000912 5.9e-06 57.8 92 38.0
ECA232G0760 Erigeron canadensis HOM05D001023 ORTHO05D000912 7.8e-06 57.4 92 37.0
Lalb_Chr11g0067341 Lupinus albus HOM05D001023 ORTHO05D000912 7.8e-06 57.4 94 37.2
Lalb_Chr23g0271891 Lupinus albus HOM05D001023 ORTHO05D000912 7.8e-06 57.4 94 36.2
PGR142G2198 Punica granatum HOM05D001023 ORTHO05D000912 7.8e-06 57.4 92 37.0
Sc18g0006770 Simmondsia chinensis HOM05D001364 ORTHO05D001316 7.8e-06 57.4 87 35.6
THA.LOC104810411 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 7.8e-06 57.4 97 33.0


User provided reference genes

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