Gene: Sopen06g018360
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g018360
- Transcript Identifier Sopen06g018360.1
- Gene Type Coding gene
- Location Spenn-ch06 : 45581418-45587016 : negative
Gene Family Information
- ID HOM05D001023
- #Genes/#Species 593/98
- Phylogenetic origin
- ID ORTHO05D000912
- #Genes/#Species 558/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen06g018360.1
Descriptions
- Description RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins. | CTC-interacting domain 11 (CID11) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Ataxin-2, C-terminal | BEST Arabidopsis thaliana protein match is: CTC-interacting domain 12
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | ISO | PLAZA Integrative Orthology | RNA binding | AT4G10610 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G49390 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR035979 | RNA-binding domain superfamily |
| IPR034825 | CID8-like protein, RNA recognition motif 2 |
| IPR000504 | RNA recognition motif domain |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR034823 | CID8-like protein, RNA recognition motif 1 |
| IPR009818 | Ataxin-2, C-terminal |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |