Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 2.0e-117 426.0 249 100.0
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 4.3e-48 195.7 127 81.1
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.8e-47 193.0 127 79.5
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 8.2e-47 191.4 127 78.7
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.8e-46 190.3 127 78.0
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.8e-46 190.3 127 78.0
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.4e-46 189.9 256 52.3
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 2.0e-45 186.8 127 75.6
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 4.5e-45 185.7 126 74.6
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 5.8e-45 185.3 127 74.8
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.0e-44 184.5 254 50.0
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.7e-44 183.7 127 74.8
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.2e-44 183.3 125 76.8
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.9e-44 183.0 128 75.0
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 3.8e-44 182.6 128 74.2
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 6.5e-44 181.8 127 74.8
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 6.5e-44 181.8 128 74.2
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 6.5e-44 181.8 126 74.6
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 6.5e-44 181.8 126 73.0
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 8.4e-44 181.4 127 74.0
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 8.4e-44 181.4 124 75.8
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 8.4e-44 181.4 125 75.2
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 8.4e-44 181.4 125 75.2
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.4e-43 180.6 125 75.2
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.4e-43 180.6 125 76.0
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.4e-43 180.6 125 74.4
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 1.9e-43 180.3 127 74.8
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.9e-43 180.3 127 74.8
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.9e-43 180.3 125 75.2
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.9e-43 180.3 257 47.9
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 1.9e-43 180.3 126 73.8
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 2.5e-43 179.9 126 73.0
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 3.2e-43 179.5 230 51.3
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 5.5e-43 178.7 123 77.2
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 5.5e-43 178.7 125 74.4
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.5e-43 178.7 257 47.5
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 7.1e-43 178.3 123 77.2
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 7.1e-43 178.3 233 50.6
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.1e-43 178.3 125 74.4
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 7.1e-43 178.3 126 71.4
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.2e-42 177.6 127 71.7
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-42 177.2 256 46.9
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-42 177.2 256 46.9
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.6e-42 177.2 127 72.4
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.1e-42 176.8 127 72.4
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.1e-42 176.8 125 73.6
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 2.1e-42 176.8 124 73.4
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 2.1e-42 176.8 124 72.6
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 2.1e-42 176.8 129 71.3
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.7e-42 176.4 125 72.8
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.7e-42 176.4 125 72.8
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.7e-42 176.4 126 73.0
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.7e-42 176.4 126 73.0
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 2.7e-42 176.4 125 73.6
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 3.5e-42 176.0 126 73.0
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.6e-42 175.6 127 71.7
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 4.6e-42 175.6 127 71.7
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 4.6e-42 175.6 127 71.7
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 4.6e-42 175.6 127 71.7
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 4.6e-42 175.6 127 71.7
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 4.6e-42 175.6 127 71.7
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 4.6e-42 175.6 127 71.7
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 4.6e-42 175.6 128 70.3
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 6.0e-42 175.3 127 70.9
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 6.0e-42 175.3 127 70.9
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 6.0e-42 175.3 127 70.9
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 6.0e-42 175.3 124 73.4
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 6.0e-42 175.3 125 74.4
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 7.9e-42 174.9 126 72.2
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 7.9e-42 174.9 123 73.2
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.0e-41 174.5 250 48.4
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.0e-41 174.5 125 74.4
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.0e-41 174.5 126 72.2
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.8e-41 173.7 126 69.8
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.3e-41 173.3 250 48.8
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 2.3e-41 173.3 126 71.4
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.0e-41 172.9 126 69.8
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 3.0e-41 172.9 124 72.6
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 3.9e-41 172.6 124 72.6
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 5.1e-41 172.2 127 70.1
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 8.7e-41 171.4 128 68.0
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.1e-40 171.0 126 69.0
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.9e-40 170.2 259 47.1
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.3e-40 169.1 123 72.4
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 4.3e-40 169.1 125 70.4
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 7.4e-40 168.3 127 70.1
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 7.4e-40 168.3 123 71.5
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 7.4e-40 168.3 123 70.7
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.4e-40 168.3 126 70.6
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 7.4e-40 168.3 126 66.7
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 9.7e-40 167.9 128 68.0
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.3e-39 167.5 123 70.7
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.3e-39 167.5 127 68.5
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 1.6e-39 167.2 127 66.9
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.6e-39 167.2 127 69.3
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.6e-39 167.2 127 69.3
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 2.2e-39 166.8 123 69.9
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.8e-39 166.4 128 66.4
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 2.8e-39 166.4 127 67.7
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 3.7e-39 166.0 124 67.7
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.8e-39 165.6 125 68.8
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 6.3e-39 165.2 127 67.7
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 6.3e-39 165.2 127 67.7
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 8.2e-39 164.9 128 66.4
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 8.2e-39 164.9 128 66.4
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 8.2e-39 164.9 127 67.7
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 8.2e-39 164.9 128 66.4
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 8.2e-39 164.9 127 66.9
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 8.2e-39 164.9 123 67.5
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.1e-38 164.5 123 70.7
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-38 164.5 127 66.9
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.1e-38 164.5 123 67.5
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.4e-38 164.1 125 66.4
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.8e-38 163.7 127 65.4
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.4e-38 163.3 126 68.3
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.1e-38 162.9 127 66.9
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.1e-38 162.9 127 66.9
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 4.1e-38 162.5 127 66.1
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 4.1e-38 162.5 123 71.5
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.3e-38 162.2 127 66.9
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 5.3e-38 162.2 237 48.1
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 1.2e-37 161.0 127 66.1
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.0e-36 157.9 119 71.4
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.3e-36 157.5 125 62.4
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.3e-36 157.5 126 66.7
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.2e-36 156.8 123 63.4
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 6.5e-36 155.2 245 44.9
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.4e-35 154.1 245 44.9
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.2e-34 151.0 114 68.4
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-34 151.0 105 73.3
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 3.6e-34 149.4 121 68.6
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.4e-33 147.5 111 70.3
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 3.9e-33 146.0 111 69.4
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 4.3e-32 142.5 125 59.2
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 5.7e-32 142.1 105 71.4
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.4e-30 137.5 107 65.4
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.8e-30 137.1 106 66.0
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 2.5e-27 126.7 96 70.8
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 7.2e-27 125.2 100 65.0
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.7e-24 115.5 106 60.4
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.3e-23 114.4 100 63.0
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-23 114.0 226 39.4
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 8.2e-23 111.7 65 84.6
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.4e-22 110.9 65 83.1
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.1e-22 109.4 223 41.3
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 7.0e-22 108.6 112 58.0
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 2.0e-21 107.1 65 81.5
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.9e-20 103.2 188 42.6
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 2.9e-20 103.2 107 56.1
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.4e-19 100.9 95 56.8
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 3.9e-17 92.8 75 64.0
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 2.6e-16 90.1 76 60.5
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 2.6e-16 90.1 76 60.5
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.1e-14 83.2 157 39.5
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 4.5e-13 79.3 56 73.2
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.9e-12 76.6 99 45.5
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.5e-11 74.3 157 42.0
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.5e-11 73.6 56 67.9
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 9.4e-11 71.6 107 45.8
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.3e-09 67.0 101 40.6
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.6e-08 63.5 54 63.0


User provided reference genes

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