Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1340.5 700 100.0
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1307.7 700 96.3
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1290.4 700 96.4
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1288.1 700 96.4
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1275.4 700 93.9
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1229.2 709 90.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1228.4 701 90.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1228.4 701 90.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1228.4 701 90.9
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1223.8 709 89.6
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1222.2 709 89.4
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1219.9 709 89.6
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1213.4 705 89.6
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1179.9 709 85.6
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1178.7 686 87.8
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1176.8 695 86.8
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1176.0 709 86.2
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 696 87.1
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1171.4 688 87.6
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1171.4 705 85.8
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1170.2 691 87.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 694 86.7
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 695 86.6
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 695 86.6
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1164.1 709 85.2
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 691 86.4
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 707 84.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 709 85.2
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 709 86.7
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 707 85.1
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 688 86.8
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 705 84.3
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 693 86.3
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 705 84.1
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 685 87.0
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 705 84.1
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 692 86.4
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 691 86.8
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 686 85.9
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 689 85.8
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 699 84.1
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 691 86.5
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 693 84.7
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 690 83.5
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1136.3 691 84.4
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 706 84.7
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 690 83.6
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 692 83.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 672 86.6
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 690 86.7
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 692 85.3
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 692 83.5
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1130.2 686 83.5
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 686 83.5
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 686 83.4
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 686 83.4
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1129.0 700 82.4
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 700 82.3
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1126.3 686 83.2
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 686 83.1
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 688 82.6
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 686 83.1
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 732 81.0
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1123.2 686 83.1
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1123.2 687 83.3
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 700 82.4
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 734 80.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 688 82.7
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1119.8 698 82.8
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1119.0 699 83.0
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 717 81.0
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 700 82.0
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1116.7 701 82.0
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 705 82.8
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 724 80.2
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1112.1 689 82.0
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 701 82.9
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1106.7 686 81.6
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1101.3 686 81.8
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1100.9 688 81.5
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1099.3 686 82.5
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 686 81.6
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 685 82.5
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1096.3 688 83.3
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1095.9 668 84.3
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1095.1 736 77.4
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1094.0 692 81.1
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1090.1 685 81.3
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1081.6 780 74.4
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.8e-310 1068.1 687 78.2
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.4e-309 1065.8 717 78.1
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.5e-308 1062.4 728 76.8
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 3.4e-308 1061.2 662 82.6
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.9e-306 1055.4 736 76.0
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.1e-301 1038.1 667 80.8
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.6e-300 1035.0 688 76.5
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.4e-298 1029.2 687 76.4
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.1e-297 1025.4 707 75.2
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.9e-291 1005.0 737 71.4
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.3e-280 968.8 592 82.9
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.1e-280 967.6 632 80.7
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 5.3e-277 957.6 611 80.5
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.6e-273 946.0 690 69.0
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.6e-273 946.0 690 69.0
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.1e-270 935.6 585 80.9
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.4e-269 932.9 683 68.2
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 8.7e-264 913.7 684 73.0
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 7.4e-263 910.6 691 67.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 4.5e-260 901.4 690 66.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 4.2e-258 894.8 566 78.6
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.5e-255 886.3 590 78.3
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.2e-254 882.5 555 81.6
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.2e-244 850.1 519 84.4
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 7.7e-244 847.4 676 68.9
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-229 800.4 480 85.0
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.5e-220 768.5 682 57.0
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 5.0e-211 738.4 676 55.6
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 7.5e-199 698.0 424 82.3
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.1e-193 677.9 467 78.4
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.7e-150 537.3 329 80.9
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.3e-147 527.7 730 42.9
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 4.8e-137 492.7 758 37.1
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.7e-134 484.2 280 86.8
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 7.2e-125 452.2 273 83.5
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.8e-123 447.6 269 85.9
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 3.4e-114 416.8 359 59.9
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.5e-114 415.6 233 88.0
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 5.0e-110 402.9 253 80.6
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.5e-110 402.1 237 85.7
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 5.5e-109 399.4 746 34.5
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.5e-103 379.8 242 82.2
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.1e-96 356.7 238 79.8
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.1e-79 301.2 181 80.7
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 5.6e-77 293.1 193 83.4
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 6.2e-76 289.7 215 69.3
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-70 271.9 148 85.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 6.6e-70 269.6 195 73.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.5e-61 241.1 192 72.4
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-59 235.3 155 67.7
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 4.2e-56 223.8 164 73.2
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 2.3e-54 218.0 156 72.4
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.4e-51 208.8 489 28.8
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 5.8e-50 203.4 246 51.6
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 7.6e-50 203.0 180 66.1
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 4.8e-44 183.7 115 83.5
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 6.2e-44 183.3 104 89.4
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.8e-42 176.8 111 84.7
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.8e-41 174.1 122 74.6
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 8.7e-38 162.9 111 73.9
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 8.8e-30 136.3 139 55.4
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 9.7e-29 132.9 94 68.1
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.8e-27 128.6 94 66.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.8e-27 128.6 94 66.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.0e-26 125.2 81 79.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.9e-24 118.6 71 81.7
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.7e-23 114.8 88 69.3
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.3e-22 111.7 104 59.6
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.7e-20 105.5 69 71.0
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 8.2e-20 103.2 91 57.1
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.3e-19 100.5 57 86.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.0e-17 96.3 77 62.3
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.0e-17 96.3 59 76.3
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 7.2e-16 90.1 65 70.8
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.2e-15 89.4 78 61.5
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.7e-12 79.0 78 52.6
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.1e-11 74.3 57 66.7
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 2.0e-10 72.0 40 92.5
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 6.5e-09 67.0 46 67.4
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.1e-08 66.2 59 62.7
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 2.3e-06 58.5 64 56.2


User provided reference genes

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