Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 6.0e-265 917.1 532 100.0
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.3e-194 682.2 548 72.3
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 3.7e-174 615.5 424 70.0
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 4.1e-173 612.1 445 67.2
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 9.2e-173 610.9 424 69.8
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 2.1e-172 609.8 435 68.0
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.3e-171 607.1 434 67.7
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 6.6e-171 604.7 435 67.8
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.6e-171 604.4 435 67.6
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.5e-170 603.6 426 68.8
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.9e-170 603.2 448 65.8
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 3.6e-169 599.0 452 65.9
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 8.1e-169 597.8 423 68.8
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.1e-168 597.4 426 68.3
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.1e-168 597.4 428 68.0
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.8e-168 596.7 439 66.3
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 4.0e-168 595.5 421 68.6
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 5.2e-168 595.1 453 65.1
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 5.2e-168 595.1 416 69.5
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 1.5e-167 593.6 424 67.9
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 2.0e-167 593.2 423 67.4
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 2.0e-167 593.2 428 67.3
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.6e-167 592.8 422 67.8
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 3.4e-167 592.4 454 65.2
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 4.4e-167 592.0 453 63.1
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 4.4e-167 592.0 425 68.0
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 7.6e-167 591.3 436 67.2
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.7e-166 590.1 459 64.3
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 2.2e-166 589.7 460 62.6
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 2.9e-166 589.3 421 67.0
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.7e-166 589.0 427 66.7
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 6.4e-166 588.2 461 64.2
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 6.4e-166 588.2 435 65.3
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 6.4e-166 588.2 429 66.7
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 1.1e-165 587.4 419 68.5
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 1.4e-165 587.0 451 63.4
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.9e-165 586.6 418 67.2
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 1.9e-165 586.6 424 67.0
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 1.9e-165 586.6 424 67.0
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 4.1e-165 585.5 419 67.5
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 7.1e-165 584.7 447 64.7
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 2.1e-164 583.2 438 65.5
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.1e-164 583.2 424 67.7
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 3.5e-164 582.4 443 65.9
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 4.6e-164 582.0 444 64.2
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 4.6e-164 582.0 452 63.9
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 6.0e-164 581.6 438 66.0
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 6.0e-164 581.6 438 66.0
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 6.0e-164 581.6 445 63.4
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 6.0e-164 581.6 425 65.2
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 7.8e-164 581.3 410 67.1
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 1.0e-163 580.9 450 63.8
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 1.7e-163 580.1 451 63.4
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 2.3e-163 579.7 449 63.5
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 5.1e-163 578.6 425 66.1
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 6.6e-163 578.2 462 62.6
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 6.6e-163 578.2 421 66.7
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 8.6e-163 577.8 450 63.8
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.5e-162 577.0 421 66.3
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 2.5e-162 576.2 430 64.7
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 9.6e-162 574.3 430 64.2
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 2.8e-161 572.8 432 65.3
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 4.7e-161 572.0 438 64.4
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 6.2e-161 571.6 452 63.9
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 6.2e-161 571.6 430 64.0
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 6.2e-161 571.6 441 63.5
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 8.1e-161 571.2 434 64.1
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.4e-160 570.5 452 61.5
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 1.4e-160 570.5 464 63.1
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.8e-160 570.1 430 65.6
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 2.4e-160 569.7 457 63.9
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 4.0e-160 568.9 427 65.8
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 8.9e-160 567.8 452 63.7
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 8.9e-160 567.8 438 65.1
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 1.5e-159 567.0 432 65.5
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 2.0e-159 566.6 433 63.5
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 2.0e-159 566.6 427 65.6
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 4.4e-159 565.5 414 66.4
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 1.3e-158 563.9 423 65.0
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 2.2e-158 563.1 492 60.2
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 2.9e-158 562.8 425 66.1
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 8.4e-158 561.2 425 69.6
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.2e-157 559.3 345 74.8
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 4.6e-156 555.4 490 59.2
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.1e-154 550.8 437 62.2
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.1e-154 550.8 419 64.7
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.9e-154 550.1 423 63.4
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 1.9e-154 550.1 426 63.6
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 1.6e-153 547.0 338 73.4
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 4.8e-153 545.4 388 66.2
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 5.3e-152 542.0 421 63.9
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.2e-149 532.7 417 62.4
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 5.4e-149 531.9 434 61.8
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.3e-147 527.3 450 60.0
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.3e-145 520.8 426 59.9
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.8e-145 518.8 422 60.4
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.7e-142 510.4 397 63.5
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 4.9e-142 508.8 355 67.9
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.6e-140 503.8 426 59.4
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 3.0e-139 499.6 433 58.0
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 3.9e-139 499.2 347 67.1
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 5.6e-138 495.4 315 73.0
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 8.4e-134 481.5 402 59.5
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.4e-133 480.7 314 70.4
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.0e-131 473.0 401 59.4
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 1.3e-123 447.6 372 61.3
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 2.2e-121 440.3 469 52.5
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 9.4e-117 424.9 344 60.2
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 8.8e-115 418.3 293 67.2
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 1.3e-110 404.4 318 63.2
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 2.5e-109 400.2 367 53.1
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 7.9e-108 395.2 332 59.0
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.0e-107 393.3 430 56.7
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 4.4e-106 389.4 312 69.9
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 1.4e-104 384.4 361 52.9
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 1.4e-104 384.4 443 48.8
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 2.0e-98 364.0 215 74.0
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 6.3e-97 359.0 304 59.5
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 1.2e-92 344.7 323 49.2
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 8.0e-92 342.0 354 51.4
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 5.7e-90 335.9 189 79.9
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 1.6e-76 291.2 315 47.0
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 2.3e-70 270.8 259 55.2
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 2.3e-70 270.8 231 58.9
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 4.3e-45 186.8 115 76.5
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 1.6e-44 184.9 136 68.4
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 1.9e-32 144.8 183 49.2
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 3.2e-32 144.1 258 38.4
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 4.3e-29 133.7 294 30.6
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 9.6e-29 132.5 114 60.5
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 2.0e-26 124.8 82 68.3
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 7.9e-23 112.8 70 71.4
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 1.1e-19 102.4 255 29.4
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 2.2e-17 94.7 109 50.5
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.5e-16 91.3 81 55.6
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 1.6e-15 88.6 210 30.0
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 6.9e-11 73.2 52 61.5
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 6.5e-09 66.6 37 78.4
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 3.6e-07 60.8 74 47.3


User provided reference genes

Program Settings