Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.8e-133 479.2 233 100.0
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.8e-118 428.7 216 96.3
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.1e-117 425.2 214 96.3
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 1.9e-114 416.0 216 92.6
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 9.5e-114 413.7 216 91.7
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 9.5e-114 413.7 216 91.2
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 3.6e-113 411.8 216 89.8
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 3.6e-113 411.8 216 90.3
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 6.1e-113 411.0 216 89.8
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 6.1e-113 411.0 216 90.7
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 8.0e-113 410.6 216 89.4
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 8.0e-113 410.6 216 89.4
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 1.0e-112 410.2 216 89.4
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 1.0e-112 410.2 216 89.4
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 1.0e-112 410.2 216 90.3
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 1.0e-112 410.2 216 90.3
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 1.0e-112 410.2 216 90.3
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 1.4e-112 409.8 216 90.3
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 1.4e-112 409.8 216 89.4
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.0e-112 408.7 216 91.2
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 3.0e-112 408.7 216 91.2
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 5.2e-112 407.9 216 89.8
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 5.2e-112 407.9 216 89.4
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 8.8e-112 407.1 216 89.8
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 1.5e-111 406.4 216 88.9
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 2.0e-111 406.0 216 89.8
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 2.0e-111 406.0 216 91.2
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 2.0e-111 406.0 216 88.0
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 2.0e-111 406.0 216 88.9
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 2.0e-111 406.0 216 88.9
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 2.0e-111 406.0 216 88.9
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 2.0e-111 406.0 216 88.9
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.6e-111 405.6 216 91.2
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 2.6e-111 405.6 216 88.4
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 3.4e-111 405.2 216 89.8
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 3.4e-111 405.2 216 89.8
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 3.4e-111 405.2 216 88.4
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 3.4e-111 405.2 215 90.2
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 4.4e-111 404.8 216 88.0
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 4.4e-111 404.8 216 88.9
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 4.4e-111 404.8 217 88.0
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 5.7e-111 404.4 216 88.4
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 5.7e-111 404.4 216 88.4
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 5.7e-111 404.4 216 88.9
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 5.7e-111 404.4 216 88.9
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 7.5e-111 404.1 216 89.8
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 7.5e-111 404.1 216 88.4
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 9.8e-111 403.7 216 88.0
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 9.8e-111 403.7 216 89.4
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 1.3e-110 403.3 214 89.7
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 1.3e-110 403.3 216 88.0
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 1.3e-110 403.3 214 90.2
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.3e-110 403.3 216 88.9
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 1.7e-110 402.9 216 89.4
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 1.7e-110 402.9 216 88.0
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.7e-110 402.9 216 88.9
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.2e-110 402.5 216 90.7
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 2.2e-110 402.5 216 87.5
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 2.2e-110 402.5 216 88.0
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 2.2e-110 402.5 216 88.0
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 2.8e-110 402.1 216 88.0
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 3.7e-110 401.7 216 87.5
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 4.9e-110 401.4 216 87.5
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 4.9e-110 401.4 216 87.5
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 4.9e-110 401.4 216 87.5
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 4.9e-110 401.4 216 88.4
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 4.9e-110 401.4 216 88.9
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 6.3e-110 401.0 216 88.9
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 8.3e-110 400.6 216 88.0
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 8.3e-110 400.6 216 88.0
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 8.3e-110 400.6 216 88.0
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 1.1e-109 400.2 216 88.9
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.1e-109 400.2 216 87.0
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 1.1e-109 400.2 216 87.0
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 1.1e-109 400.2 216 88.0
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 1.4e-109 399.8 216 88.4
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 1.8e-109 399.4 216 87.5
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 1.8e-109 399.4 216 87.5
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 1.8e-109 399.4 216 87.5
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 1.8e-109 399.4 216 87.5
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 1.8e-109 399.4 216 87.0
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 1.8e-109 399.4 216 86.1
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 1.8e-109 399.4 216 87.5
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 2.4e-109 399.1 216 87.5
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 2.4e-109 399.1 216 87.5
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 3.1e-109 398.7 216 85.6
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 4.1e-109 398.3 216 87.0
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 5.4e-109 397.9 216 87.5
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 5.4e-109 397.9 216 87.0
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 7.0e-109 397.5 216 87.0
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 7.0e-109 397.5 216 87.5
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 9.2e-109 397.1 216 87.0
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 1.2e-108 396.7 216 87.5
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 1.2e-108 396.7 215 86.5
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.2e-108 396.7 216 86.1
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 1.6e-108 396.4 216 88.0
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 2.0e-108 396.0 216 88.0
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 3.5e-108 395.2 216 85.6
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 3.5e-108 395.2 215 86.5
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 4.5e-108 394.8 216 86.6
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 5.9e-108 394.4 216 86.6
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 5.9e-108 394.4 216 85.2
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 1.0e-107 393.7 216 85.2
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 1.0e-107 393.7 216 86.1
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 1.3e-107 393.3 222 86.0
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 1.7e-107 392.9 216 86.1
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 2.3e-107 392.5 216 84.7
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 5.0e-107 391.3 216 87.0
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 5.0e-107 391.3 228 83.3
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 5.0e-107 391.3 228 83.3
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.5e-106 389.8 228 82.9
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 1.5e-106 389.8 216 86.1
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.5e-106 389.0 228 82.5
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 2.5e-106 389.0 216 85.2
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 3.3e-106 388.7 216 86.6
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 3.6e-105 385.2 216 85.2
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 6.1e-105 384.4 215 82.8
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 2.3e-104 382.5 215 82.3
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 3.0e-104 382.1 215 83.3
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 2.2e-102 375.9 212 84.9
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.7e-102 375.2 213 87.8
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 3.2e-101 372.1 216 83.3
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 3.2e-101 372.1 214 80.4
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 1.3e-99 366.7 214 78.5
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 3.9e-99 365.2 193 91.2
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 1.6e-97 359.8 189 91.5
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 1.6e-97 359.8 214 83.2
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 8.0e-97 357.5 189 89.4
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 1.5e-95 353.2 216 80.1
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.6e-95 352.4 204 79.9
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 9.8e-95 350.5 216 75.5
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 5.4e-93 344.7 216 74.1
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.0e-92 342.8 204 79.4
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 3.3e-90 335.5 217 72.4
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 8.1e-89 330.9 217 72.4
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 8.1e-89 330.9 217 72.4
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.5e-84 315.5 213 77.0
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 8.6e-83 310.8 210 77.1
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 3.4e-79 298.9 216 67.6
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 2.1e-73 279.6 216 67.1
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 7.6e-71 271.2 203 69.5
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 1.3e-70 270.4 214 64.0
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.0e-67 260.8 143 87.4
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 4.8e-65 251.9 287 52.6
CBR_g46282 Chara braunii HOM05D003708 ORTHO05D004452 6.9e-64 248.1 160 73.1
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 1.1e-58 230.7 127 87.4
Nitab4.5_0000308g0370 Nicotiana tabacum HOM05D003708 ORTHO05D004452 2.0e-55 219.9 110 90.9
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 1.9e-53 213.4 118 87.3
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.9e-39 165.2 213 48.4
Peaxi162Scf00286g00237 Petunia axillaris HOM05D003708 ORTHO05D004452 4.5e-31 139.0 73 87.7
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 3.6e-28 129.4 78 80.8
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 9.7e-26 121.3 131 61.1
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 6.9e-24 115.2 62 88.7
CDE11G0718 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 6.1e-20 102.1 76 63.2
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 8.0e-20 101.7 56 80.4
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.2e-17 93.6 213 36.2
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.8e-16 90.5 213 35.7
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 1.6e-15 87.4 65 66.2
MCO09G633 Micromonas commoda HOM05D003708 ORTHO05D004452 1.6e-15 87.4 248 32.7
PRCOL_00005267 Prasinoderma coloniale HOM05D003708 ORTHO05D004452 1.7e-14 84.0 243 30.0
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 3.8e-14 82.8 54 70.4
VMungo1215G0191 Vigna mungo HOM05D000113 ORTHO05D005275 1.5e-13 80.9 79 57.0
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.5e-13 80.9 72 59.7
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 1.9e-13 80.5 105 48.6
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 1.2e-12 77.8 47 74.5
Peaxi162Scf01320g00019 Petunia axillaris HOM05D000176 ORTHO05D000106 1.6e-12 77.4 47 70.2
vmacro01715 Vaccinium macrocarpon HOM05D003708 ORTHO05D426473 2.8e-09 66.6 65 60.0
MD11G1199400 Malus domestica HOM05D003708 ORTHO05D004452 2.4e-08 63.5 31 87.1
Actinidia27884 Actinidia chinensis HOM05D003708 ORTHO05D053587 1.6e-07 60.8 56 58.9
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.3e-06 57.8 184 27.2
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 5.0e-06 55.8 184 27.2
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 5.0e-06 55.8 163 27.0


User provided reference genes

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