Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1340.1 646 100.0
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1239.9 647 92.1
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1223.8 650 90.8
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1206.4 647 89.5
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1202.2 641 89.1
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1200.3 646 88.1
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1198.0 648 88.1
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1197.2 645 88.1
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1197.2 645 88.1
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1196.8 645 88.1
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1196.4 646 88.7
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1196.4 646 87.5
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1196.4 646 87.8
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1194.9 646 88.2
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1194.9 645 88.2
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1194.5 642 88.8
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1188.7 642 87.2
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1184.9 648 88.4
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 642 88.2
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 643 87.2
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 643 86.8
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1182.5 647 87.0
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 643 86.6
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 644 87.3
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 642 87.5
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1179.1 649 85.8
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1179.1 643 87.6
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 642 87.7
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1177.9 642 86.9
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 644 86.5
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 643 86.8
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 644 86.5
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 644 86.3
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 643 87.4
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 643 87.2
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1174.5 646 86.5
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1173.3 649 85.5
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1172.9 645 86.2
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 643 87.1
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 646 86.4
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1172.1 649 86.1
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 644 86.5
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 646 86.4
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 647 85.6
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 645 86.5
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 646 87.3
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1171.0 642 86.9
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1170.2 640 87.0
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 644 86.2
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 643 86.9
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 645 86.5
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1168.7 646 86.4
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1168.7 644 86.0
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 642 86.4
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 641 87.5
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 642 87.1
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 642 87.4
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 646 86.1
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1163.3 646 87.0
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 644 85.6
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1162.1 643 86.2
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1161.0 643 86.2
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 643 85.5
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 642 84.6
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 642 84.6
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1157.9 643 86.3
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1156.7 643 85.7
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1156.4 644 86.0
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 642 84.1
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 642 84.1
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 642 85.2
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 643 84.8
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1152.9 639 87.3
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1152.5 647 85.2
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1150.2 643 84.4
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1148.7 648 85.5
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1147.9 642 83.8
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 646 84.4
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 649 86.1
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 640 85.2
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1146.0 643 84.0
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1144.0 642 84.6
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 710 78.2
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1142.9 643 84.8
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1142.1 642 84.7
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 644 83.4
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 641 84.4
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 643 84.4
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 643 84.4
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1139.4 594 90.7
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 639 84.5
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1136.3 643 84.3
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1135.2 643 84.1
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1134.8 643 84.4
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1132.5 643 83.8
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1132.1 643 84.3
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1128.6 590 90.0
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1126.3 640 83.4
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1123.6 593 90.4
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1120.5 640 82.7
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1115.9 640 84.1
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1092.0 645 80.8
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1089.3 643 81.2
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 1.4e-308 1062.4 673 77.1
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 5.9e-307 1057.0 644 79.5
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 5.3e-300 1033.9 542 89.7
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 2.0e-299 1031.9 610 80.2
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 5.9e-299 1030.4 577 83.9
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 6.1e-296 1020.4 587 82.3
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 8.8e-295 1016.5 594 80.6
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 1.5e-294 1015.8 610 81.0
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 4.7e-288 994.2 562 82.4
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 4.4e-286 987.6 553 83.0
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 6.0e-251 870.9 480 85.4
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 5.8e-230 801.2 512 73.6
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 5.0e-197 691.8 423 80.6
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 2.2e-192 676.4 393 81.2
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 1.4e-191 673.7 581 59.6
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 1.8e-146 523.9 267 91.8
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.2e-126 458.0 550 47.6
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 5.3e-74 283.1 227 62.1
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 2.3e-69 267.7 125 96.8
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.8e-53 214.9 151 72.8
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.6e-49 201.8 106 90.6
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 5.0e-40 170.2 94 87.2
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 4.0e-37 160.6 169 55.6
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.4e-20 104.0 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.9e-19 100.5 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 7.9e-09 66.6 32 93.8


User provided reference genes

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