Gene: Solyc06g006080.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g006080.3
  • Transcript Identifier Solyc06g006080.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 1122811-1125885 : positive

Gene Family Information

  • ID HOM05D006184
  • #Genes/#Species 128/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g006080.3.1
  • uniprot A0A3Q7GP23
  • gene_id Solyc06g006080

Descriptions

  • Description Phosphomethylpyrimidine synthase (AHRD V3.3 *** A0A2G3C580_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009228
IEA
GOA Databasethiamine biosynthetic process
GO:0009228
IEA
InterProthiamine biosynthetic process
GO:0016045
ISO
PLAZA Integrative Orthologydetection of bacterium AT2G29630
GO:0010266
ISO
PLAZA Integrative Orthologyresponse to vitamin B1 AT2G29630

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0051536
IEA
InterProiron-sulfur cluster binding
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016829
IEA
GOA Databaselyase activity
GO:0016830
IEA
GOA Databasecarbon-carbon lyase activity
GO:0019904
ISO
PLAZA Integrative Orthologyprotein domain specific binding AT2G29630
GO:0080041
ISO
PLAZA Integrative OrthologyADP-ribose pyrophosphohydrolase activity AT2G29630

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT2G29630
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G29630
GO:0009536
ISO
PLAZA Integrative Orthologyplastid AT2G29630

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038521 ThiC/Bza, core domain
IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B
IPR025747 ThiC-associated domain
Mapman id Description
7.2.1.1 Coenzyme metabolism.thiamine pyrophosphate biosynthesis.hydroxymethylpyrimidine diphosphate biosynthesis.hydroxymethylpyrimidine phosphate synthase (ThiC)