Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 0.0e+00 1378.6 725 100.0
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 0.0e+00 1153.7 731 83.2
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 0.0e+00 1117.8 736 80.2
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 0.0e+00 1116.7 733 81.4
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 0.0e+00 1109.0 784 76.0
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 0.0e+00 1108.6 720 82.4
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 0.0e+00 1107.8 735 82.0
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 0.0e+00 1106.3 733 80.6
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 0.0e+00 1097.8 730 81.5
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 0.0e+00 1091.3 733 79.1
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 0.0e+00 1090.9 732 79.4
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 0.0e+00 1088.6 736 79.5
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 0.0e+00 1087.8 736 79.6
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 0.0e+00 1087.0 735 78.1
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 0.0e+00 1086.6 732 78.7
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 0.0e+00 1085.9 749 78.8
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 0.0e+00 1081.6 723 80.1
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 0.0e+00 1080.1 739 78.1
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 0.0e+00 1079.3 735 79.0
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 9.9e-312 1073.2 729 79.0
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 1.7e-310 1068.9 734 77.9
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 5.4e-309 1063.9 732 79.6
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 1.2e-308 1062.8 738 77.6
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 2.7e-308 1061.6 723 77.0
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 7.8e-308 1060.1 730 77.5
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.1e-306 1056.2 730 78.1
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 7.3e-306 1053.5 729 76.4
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 9.6e-306 1053.1 731 77.6
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 8.1e-305 1050.0 731 77.3
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 4.0e-304 1047.7 728 78.0
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 6.9e-304 1047.0 724 76.7
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 5.8e-303 1043.9 754 73.7
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 2.2e-302 1042.0 730 76.4
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 3.8e-302 1041.2 732 76.6
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 8.4e-302 1040.0 732 75.4
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 2.4e-301 1038.5 683 80.4
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 4.2e-301 1037.7 720 76.5
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 7.8e-300 1033.5 730 76.2
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 3.9e-299 1031.2 730 75.8
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 8.7e-299 1030.0 783 73.8
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 1.9e-298 1028.9 730 75.2
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 3.6e-297 1024.6 722 74.9
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 3.6e-297 1024.6 697 76.5
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 8.1e-297 1023.5 721 76.6
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 1.1e-296 1023.1 801 72.8
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.4e-295 1018.1 725 74.8
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 7.6e-295 1016.9 713 77.0
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 6.4e-294 1013.8 764 71.6
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.4e-294 1013.8 730 75.2
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 8.4e-294 1013.4 730 75.3
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 2.4e-293 1011.9 674 79.4
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 7.1e-293 1010.4 727 73.5
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 9.3e-293 1010.0 728 75.3
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 3.5e-292 1008.1 709 75.0
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 5.1e-291 1004.2 727 75.0
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 1.1e-290 1003.0 723 76.1
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 2.8e-289 998.4 744 72.3
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 1.1e-288 996.5 754 72.0
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 1.8e-288 995.7 728 73.5
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 2.4e-288 995.3 667 78.1
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.3e-288 994.2 713 75.3
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 1.3e-286 989.6 714 74.2
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 3.8e-286 988.0 725 74.2
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.1e-285 986.5 731 74.0
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 5.1e-283 977.6 743 75.0
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 6.7e-283 977.2 727 73.3
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 8.7e-283 976.9 726 72.6
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 2.1e-281 972.2 673 75.6
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 3.7e-281 971.5 726 73.0
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 1.1e-280 969.9 609 81.1
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 1.4e-280 969.5 670 76.6
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 5.3e-280 967.6 580 82.6
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.2e-279 966.5 730 71.0
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 2.2e-278 962.2 706 74.2
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 3.8e-278 961.4 646 80.7
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 3.2e-277 958.4 725 71.9
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 7.1e-277 957.2 726 71.8
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 7.1e-277 957.2 736 72.0
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 2.7e-276 955.3 727 71.5
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 8.7e-275 950.3 719 70.8
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 1.1e-274 949.9 731 71.4
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 1.6e-273 946.0 731 71.1
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 1.6e-273 946.0 726 68.9
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 3.8e-270 934.9 625 79.2
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 3.6e-268 928.3 504 89.3
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 7.9e-268 927.2 520 86.2
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 6.7e-267 924.1 749 68.1
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.9e-266 922.5 742 70.2
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 9.7e-266 920.2 751 67.8
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 5.3e-264 914.4 724 67.1
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 4.1e-256 888.3 727 67.5
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 5.0e-254 881.3 799 61.5
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 1.7e-249 866.3 472 86.9
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.3e-240 834.7 628 73.4
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 8.5e-238 827.4 673 66.1
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.0e-230 803.9 734 64.0
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 3.4e-226 788.9 751 60.5
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 3.3e-221 772.3 536 69.6
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 2.3e-219 766.1 742 59.2
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 7.8e-207 724.5 506 69.4
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 3.3e-205 719.2 409 85.3
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 6.8e-195 684.9 693 59.2
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 3.0e-190 669.5 344 91.6
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.6e-183 647.1 550 58.2
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.7e-182 643.7 549 67.9
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 1.2e-175 620.9 470 63.4
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.6e-175 620.5 521 58.3
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.6e-167 594.0 365 79.5
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.6e-167 594.0 541 64.7
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 1.4e-134 484.6 502 50.0
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 4.5e-130 469.5 492 55.1
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 8.8e-126 455.3 579 43.9
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.6e-122 444.5 255 80.4
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 2.0e-114 417.5 552 44.0
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 6.6e-113 412.5 377 68.7
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.8e-102 377.9 214 86.0
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 2.6e-101 374.0 512 38.7
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 4.0e-94 350.1 179 92.7
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 1.1e-86 325.5 263 64.6
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 7.5e-85 319.3 361 60.1
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.7e-76 291.6 157 87.3
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.2e-69 268.9 312 55.1
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 6.4e-60 236.5 172 69.2
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.6e-45 188.0 246 52.4
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.6e-45 188.0 101 87.1
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.0e-44 186.0 245 52.2
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.2e-43 180.6 295 47.5
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 1.1e-30 139.4 230 52.2
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 4.1e-30 137.5 95 75.8
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-24 119.0 76 80.3
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 3.9e-17 94.4 119 48.7
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 5.2e-17 94.0 199 46.7
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 7.0e-14 83.6 108 60.2
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.7e-12 79.0 171 39.8
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.9e-11 75.5 370 31.4
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 9.4e-11 73.2 168 38.7
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 6.3e-07 60.5 91 46.2
Sopen00g012230 Solanum pennellii HOM05D005363 ORTHO05D006607 1.8e-06 58.9 79 57.0


User provided reference genes

Program Settings