Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 4.9e-160 567.8 291 100.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.6e-118 429.9 277 80.1
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 5.1e-109 398.3 293 72.4
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 8.8e-109 397.5 293 69.6
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 8.8e-109 397.5 293 70.0
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 3.3e-108 395.6 292 70.2
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 1.3e-107 393.7 295 70.5
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.7e-107 392.1 289 73.0
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.4e-105 385.6 294 67.7
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.5e-105 385.2 294 67.3
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.7e-104 383.3 293 66.6
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 2.9e-104 382.5 277 72.2
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 8.5e-104 380.9 294 67.7
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 1.1e-103 380.6 293 67.2
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 1.9e-103 379.8 294 67.7
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.2e-102 377.1 294 67.3
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.2e-102 377.1 294 67.3
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.6e-102 376.7 293 66.2
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 1.6e-102 376.7 294 69.4
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 1.0e-101 374.0 293 66.2
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.4e-101 373.6 294 66.0
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 8.8e-101 370.9 291 67.0
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 3.3e-100 369.0 291 65.6
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 4.4e-100 368.6 281 69.4
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 2.2e-99 366.3 292 67.1
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 3.7e-99 365.5 246 72.8
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 3.7e-99 365.5 246 72.8
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 3.7e-99 365.5 287 66.6
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 4.8e-99 365.2 294 68.0
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.1e-98 364.0 293 64.5
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 1.4e-98 363.6 295 65.8
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.4e-98 363.6 233 75.1
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 5.3e-98 361.7 293 65.9
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 9.1e-98 360.9 293 66.6
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.2e-97 360.5 267 71.5
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 2.0e-97 359.8 297 64.3
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 3.5e-97 359.0 286 66.1
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 1.3e-96 357.1 293 66.2
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.3e-96 357.1 297 63.3
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 1.3e-96 357.1 287 65.9
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 1.7e-96 356.7 258 70.2
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 6.5e-96 354.8 291 65.3
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 2.5e-95 352.8 297 63.6
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 4.2e-95 352.1 294 61.6
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 4.2e-95 352.1 307 61.6
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 5.5e-95 351.7 294 62.9
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 4.7e-94 348.6 326 58.3
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 6.1e-94 348.2 293 60.4
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.0e-93 347.4 233 73.8
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.8e-93 346.7 290 61.0
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.0e-93 345.9 287 63.1
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 3.9e-93 345.5 292 62.0
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.1e-92 344.0 299 61.9
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.1e-92 344.0 294 62.2
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 2.6e-92 342.8 293 61.8
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 2.6e-92 342.8 247 68.4
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 2.6e-92 342.8 247 67.2
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 7.4e-92 341.3 246 66.7
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 9.7e-92 340.9 350 54.9
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 9.7e-92 340.9 293 61.8
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.3e-91 340.5 296 60.1
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.3e-91 340.5 247 66.4
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 3.7e-91 339.0 291 62.5
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 6.3e-91 338.2 293 60.8
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.1e-90 337.4 254 66.9
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.4e-90 337.0 265 66.8
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 1.8e-90 336.7 298 61.1
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.8e-90 336.7 297 59.6
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 2.4e-90 336.3 307 59.0
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 3.1e-90 335.9 296 61.1
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 7.0e-90 334.7 294 58.5
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 7.0e-90 334.7 296 60.8
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.6e-89 333.6 296 59.5
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.6e-89 333.6 300 59.3
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.6e-89 333.6 333 54.7
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 2.0e-89 333.2 296 60.1
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 3.5e-89 332.4 248 66.5
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 4.5e-89 332.0 296 59.8
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 4.5e-89 332.0 296 59.8
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.0e-88 330.9 265 66.0
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 1.3e-88 330.5 279 64.2
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 1.3e-88 330.5 293 60.8
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.3e-88 330.5 291 61.5
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 2.2e-88 329.7 289 61.2
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 5.0e-88 328.6 296 59.5
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 8.5e-88 327.8 297 58.9
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 8.5e-88 327.8 322 56.2
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 1.1e-87 327.4 291 59.5
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.9e-87 326.6 253 66.4
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 7.2e-87 324.7 233 68.2
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.6e-86 323.6 287 59.6
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.7e-86 322.8 258 62.8
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 1.2e-84 317.4 266 63.2
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 1.5e-84 317.0 225 68.0
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 3.7e-83 312.4 283 59.4
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 1.4e-82 310.5 207 74.9
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.0e-80 304.3 226 67.7
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 8.5e-80 301.2 281 57.7
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 8.5e-80 301.2 284 57.7
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 2.6e-76 289.7 208 68.8
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.4e-76 288.9 226 65.5
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 4.4e-76 288.9 237 65.0
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 7.5e-76 288.1 289 53.3
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 3.7e-75 285.8 213 67.1
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 5.0e-72 275.4 226 63.7
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 9.5e-71 271.2 252 57.9
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.0e-69 267.7 297 52.2
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.7e-67 260.4 205 69.8
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.4e-61 240.7 280 48.2
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.4e-58 230.7 204 63.2
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-57 227.6 225 57.3
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 3.5e-57 226.1 214 57.9
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 4.6e-57 225.7 205 60.0
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 7.8e-57 224.9 189 57.7
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 7.3e-55 218.4 181 63.5
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 1.4e-53 214.2 236 56.4
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 6.8e-53 211.8 149 72.5
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 6.8e-53 211.8 249 43.8
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 1.3e-51 207.6 273 48.4
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 8.3e-51 204.9 278 43.9
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 5.4e-50 202.2 127 74.8
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 9.2e-50 201.4 251 42.2
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 7.8e-49 198.4 239 47.7
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.1e-45 188.0 293 43.3
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 4.9e-43 179.1 205 49.3
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 1.4e-42 177.6 122 67.2
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.4e-42 177.6 107 76.6
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.7e-40 170.6 191 51.3
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.5e-39 167.5 205 49.3
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 1.1e-34 151.4 115 63.5
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 2.3e-32 143.7 300 34.0
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.3e-32 143.7 139 56.8
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.8e-30 136.7 85 80.0
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 5.3e-29 132.5 199 45.7
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 5.3e-29 132.5 217 42.4
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.4e-21 107.8 170 38.8
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 1.0e-16 91.7 205 30.7
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 2.8e-14 83.6 279 28.0
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 2.6e-12 77.0 44 84.1


User provided reference genes

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