Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 0.0e+00 1125.2 557 100.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.9e-177 625.9 528 62.7
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 4.3e-173 612.1 537 62.4
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 5.7e-173 611.7 502 64.9
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 9.0e-171 604.4 525 61.9
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.0e-169 600.9 529 59.5
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.2e-162 577.4 528 59.5
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.6e-162 576.2 519 59.2
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 3.4e-162 575.9 528 59.3
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 7.7e-162 574.7 653 51.3
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 6.5e-161 571.6 527 58.8
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 4.6e-159 565.5 537 57.2
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 6.1e-159 565.1 519 58.6
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 6.7e-158 561.6 533 57.8
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.3e-156 557.4 537 57.9
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.5e-152 543.1 526 57.8
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.2e-151 540.8 535 54.4
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 2.0e-149 533.5 536 54.9
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 3.7e-148 529.3 526 56.5
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 3.7e-148 529.3 544 52.2
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 9.1e-147 524.6 522 55.2
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 5.9e-146 521.9 531 54.0
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.3e-145 520.8 537 54.9
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.2e-144 515.8 513 55.2
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 8.0e-143 511.5 512 54.7
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.0e-142 511.1 527 53.9
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 3.0e-142 509.6 512 54.7
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 5.2e-142 508.8 528 52.5
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.5e-141 507.3 512 54.5
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 4.4e-141 505.8 526 54.4
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.2e-140 503.4 501 55.5
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.2e-140 503.4 501 55.5
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 3.1e-139 499.6 535 52.3
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.5e-136 490.7 530 50.8
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.5e-136 490.0 540 51.9
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 5.5e-136 488.8 540 51.9
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 7.2e-136 488.4 533 52.7
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.7e-135 486.5 541 51.0
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 3.6e-135 486.1 532 50.2
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 8.0e-135 485.0 541 51.0
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.0e-134 484.6 519 52.2
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.4e-134 484.2 548 50.9
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 1.2e-133 481.1 538 50.7
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.5e-133 480.7 547 49.9
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 4.4e-133 479.2 513 50.7
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.3e-132 477.6 496 54.8
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.8e-132 476.5 500 51.4
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.7e-132 476.1 531 50.3
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 8.3e-132 474.9 535 50.1
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.4e-131 472.2 514 50.6
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.5e-130 469.2 506 52.2
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.9e-129 466.5 514 50.4
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 5.5e-128 462.2 546 49.1
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 9.4e-128 461.5 501 51.5
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.1e-127 460.3 483 53.4
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 4.7e-127 459.1 518 51.2
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 8.0e-127 458.4 537 49.7
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.8e-126 457.2 554 49.5
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.8e-126 457.2 516 50.2
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 3.0e-126 456.4 512 51.4
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.2e-126 455.7 533 47.3
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.8e-125 451.4 529 47.1
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.7e-124 450.7 549 48.3
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.7e-124 450.7 527 49.1
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.2e-124 450.3 544 48.0
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 7.7e-122 441.8 528 47.2
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.1e-120 438.0 515 47.6
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.0e-118 431.4 531 46.1
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.8e-118 430.6 519 47.8
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 2.6e-117 426.8 501 47.7
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 2.6e-117 426.8 531 45.4
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 4.4e-117 426.0 537 47.5
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 7.5e-117 425.2 531 45.8
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 9.8e-117 424.9 516 46.7
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.7e-116 424.1 549 45.0
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.2e-116 423.7 506 49.4
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 2.2e-116 423.7 524 46.6
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.7e-116 422.9 552 45.5
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.9e-116 422.5 507 46.4
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 4.9e-116 422.5 534 46.3
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 9.2e-115 418.3 537 46.4
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 5.9e-114 415.6 545 46.2
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 3.0e-113 413.3 530 45.7
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.9e-112 410.6 507 46.5
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 6.2e-111 405.6 492 47.4
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.1e-110 403.3 499 44.5
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 9.8e-109 398.3 532 44.9
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 6.4e-108 395.6 439 50.6
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 1.2e-106 391.3 526 43.2
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.6e-106 391.0 542 44.5
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-105 387.1 520 43.8
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 4.3e-104 382.9 512 45.1
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.6e-103 380.9 522 44.1
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 3.1e-102 376.7 480 46.0
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.9e-99 367.5 509 41.5
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.6e-98 364.4 371 55.3
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-97 360.5 512 42.4
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 5.1e-97 359.4 509 42.8
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.9e-96 357.5 506 42.7
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 3.3e-96 356.7 362 55.5
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 9.5e-96 355.1 528 40.9
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 4.7e-95 352.8 363 54.3
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.8e-94 350.9 508 41.7
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 2.3e-94 350.5 502 44.0
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 5.2e-94 349.4 515 40.6
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 6.8e-94 349.0 520 40.6
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 8.9e-94 348.6 507 41.8
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.5e-93 347.8 515 40.4
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 5.8e-93 345.9 538 39.2
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.1e-91 341.7 515 40.0
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 3.2e-91 340.1 515 39.8
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 5.6e-88 329.3 227 73.6
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.6e-87 326.6 480 40.8
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 7.1e-83 312.4 467 40.5
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 2.7e-82 310.5 218 69.3
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 3.5e-82 310.1 305 52.8
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.6e-80 302.8 536 38.1
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 3.6e-79 300.1 531 39.0
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.1e-70 270.4 275 54.2
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 5.8e-69 266.2 409 41.3
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.7e-66 257.3 408 40.4
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 7.6e-61 239.2 323 41.8
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 7.1e-59 232.6 296 44.6
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.3e-57 227.6 168 64.9
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.9e-56 224.6 354 43.5
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.1e-55 221.1 239 51.9
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.4e-51 208.4 502 30.1
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.0e-44 185.7 584 28.1
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 2.2e-44 184.5 520 29.0
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.2e-43 180.6 513 28.3
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.8e-39 167.5 106 73.6
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 5.3e-38 163.3 493 27.8
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 6.9e-38 162.9 106 72.6
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.5e-35 153.3 141 54.6
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 7.2e-27 126.3 100 57.0
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-24 118.2 431 26.5
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.7e-23 114.0 345 29.6
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.4e-14 85.5 107 39.3
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.2e-13 82.4 81 54.3
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.2e-13 82.4 236 29.7
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 2.0e-13 81.6 76 51.3
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.8e-12 77.4 105 37.1
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.1e-10 71.6 76 47.4
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.8e-09 68.6 60 56.7
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.0e-09 67.4 65 55.4
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 6.8e-09 66.6 66 48.5
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 4.4e-08 63.9 54 57.4
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 5.7e-08 63.5 54 57.4
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.3e-07 62.4 88 38.6
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.8e-07 61.2 41 70.7
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.4e-06 58.2 36 69.4
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 2.4e-06 58.2 69 40.6
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 3.1e-06 57.8 113 27.4
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 5.4e-06 57.0 58 50.0
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 9.2e-06 56.2 123 38.2


User provided reference genes

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