Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1682.9 842 100.0
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1558.1 835 92.6
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1538.9 842 90.9
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1496.5 846 88.2
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1493.8 842 88.0
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1483.8 845 87.7
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1483.0 842 87.4
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1473.0 921 82.0
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1459.5 842 85.7
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1459.1 844 85.4
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1459.1 844 85.4
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1457.6 849 84.9
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1456.8 845 85.6
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1456.4 845 85.6
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1455.3 846 85.3
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1455.3 842 85.6
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1453.7 846 85.2
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1447.2 842 84.9
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1446.4 842 84.7
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1446.0 842 84.6
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1446.0 851 84.6
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1446.0 848 85.4
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1444.5 857 85.3
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1444.5 845 84.3
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1444.1 837 85.7
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1443.7 843 84.3
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1443.7 845 85.1
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1443.7 908 79.7
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1443.3 851 84.7
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1443.3 851 84.5
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1442.6 845 84.1
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1440.2 842 84.6
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1439.5 845 84.4
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1436.8 842 84.8
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1436.0 862 82.8
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1432.9 844 84.4
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1432.5 849 83.9
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1431.8 851 84.0
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1422.9 872 83.0
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1419.8 842 83.5
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1419.8 845 83.3
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1419.1 845 83.1
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1418.7 843 83.9
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1417.5 842 82.8
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1416.4 842 83.6
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1416.0 846 82.4
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1415.2 845 83.3
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1414.4 842 82.9
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1408.3 851 83.9
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1407.1 846 81.8
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1405.2 839 82.2
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1403.3 865 80.7
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1402.9 864 81.2
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1402.1 909 78.9
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1399.8 850 82.1
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1398.6 842 82.1
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1396.7 894 78.1
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1395.9 861 80.4
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1395.2 840 81.8
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1394.4 846 81.2
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1390.2 846 81.8
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1377.8 861 79.4
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1376.7 845 80.8
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1376.7 850 81.4
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1376.3 947 74.2
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1373.2 845 80.8
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1372.8 861 79.3
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1368.6 861 79.1
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1366.3 845 80.2
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1361.7 863 78.3
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1346.6 920 74.1
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1339.3 865 77.8
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1339.3 920 73.7
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1336.6 865 77.6
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1336.6 865 77.6
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1336.2 865 77.7
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1336.2 865 77.7
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1336.2 865 77.7
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1336.2 865 77.6
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1335.5 837 77.1
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1333.5 839 78.9
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1327.8 865 77.2
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1325.5 865 76.8
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1324.7 865 76.6
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1321.2 865 76.9
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1317.0 785 82.0
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1315.8 855 75.4
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1310.8 762 84.8
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1251.1 726 84.6
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1184.9 838 72.6
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1182.2 845 71.6
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1126.3 842 64.5
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1115.5 851 70.0
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1110.1 834 64.7
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 0.0e+00 1105.1 849 71.3
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 0.0e+00 1099.7 880 65.6
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1087.0 1141 55.5
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.1e-305 1053.1 622 83.0
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 6.1e-304 1047.3 838 60.6
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 2.5e-289 998.8 696 74.4
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 2.6e-286 988.8 805 64.8
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 3.3e-281 971.8 726 72.0
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.2e-246 857.1 602 71.1
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 5.6e-233 811.6 685 63.8
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.5e-225 786.2 472 81.8
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.1e-220 768.1 601 68.2
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 1.4e-212 743.8 432 85.9
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 3.5e-211 739.2 469 81.2
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 4.5e-206 722.2 405 85.4
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 5.2e-178 629.0 848 41.9
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.7e-176 622.9 369 86.2
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 2.4e-175 620.2 341 90.9
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 1.5e-172 610.9 356 82.3
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 9.5e-164 581.6 856 39.5
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 5.6e-140 502.7 825 36.1
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 3.5e-126 456.8 431 56.8
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 9.0e-122 442.2 593 47.2
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 2.6e-121 440.7 1005 31.2
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 3.9e-117 426.8 377 63.4
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.1e-116 425.2 260 78.1
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.6e-116 422.9 327 59.3
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.3e-101 374.4 332 56.0
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 2.9e-88 330.9 238 73.1
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.0e-81 308.1 218 69.7
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.2e-78 298.9 165 87.3
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.1e-78 298.1 320 49.7
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.1e-74 285.8 157 82.8
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.5e-44 185.7 97 90.7
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.9e-40 171.0 116 71.6
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-38 166.0 113 70.8
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 3.1e-37 161.4 101 77.2
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 3.9e-32 144.4 93 79.6
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 6.6e-32 143.7 93 78.5
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 8.6e-32 143.3 85 82.4
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 4.7e-30 137.5 87 77.0
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 6.2e-30 137.1 106 70.8
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 8.1e-30 136.7 91 74.7
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 5.2e-29 134.0 67 91.0
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 8.9e-29 133.3 91 73.6
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.5e-28 132.5 125 63.2
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 9.9e-28 129.8 129 57.4
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 6.4e-27 127.1 96 70.8
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.9e-26 125.6 185 45.4
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 2.4e-26 125.2 113 60.2
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 7.1e-26 123.6 100 67.0
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 9.2e-26 123.2 80 71.2
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 4.6e-25 120.9 103 65.0
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 9.5e-23 113.2 96 63.5
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-21 109.8 68 73.5
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-19 102.8 61 75.4
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.9e-18 99.0 52 88.5
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.4e-18 98.6 192 34.9
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 5.4e-18 97.4 52 86.5
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 7.1e-18 97.1 81 65.4
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.2e-17 96.3 54 92.6
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 6.0e-17 94.0 115 47.8
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 1.4e-13 82.8 87 54.0
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 1.4e-13 82.8 87 54.0
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 9.0e-13 80.1 49 81.6
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 6.4e-11 73.9 79 51.9
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 8.4e-11 73.6 37 94.6
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.7e-09 68.6 34 94.1
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 1.3e-08 66.2 85 50.6
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 4.3e-07 61.2 39 76.9
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 2.1e-06 58.9 41 70.7


User provided reference genes

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