Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0531 Trochodendron aralioides HOM05D005142 ORTHO05D006519 0.0e+00 1182.5 593 100.0
Nn6g34331 Nelumbo nucifera HOM05D005142 ORTHO05D006519 2.7e-157 559.7 580 56.2
Dinv32401 Davidia involucrata HOM05D005142 ORTHO05D006519 2.9e-111 406.8 531 49.3
Aqoxy7G00511 Aquilegia oxysepala HOM05D005142 ORTHO05D006519 5.8e-99 365.9 545 46.1
Thecc.01G372200 Theobroma cacao HOM05D005142 ORTHO05D006519 1.2e-93 348.2 604 42.9
CSS0026616 Camellia sinensis var. sinensis HOM05D005142 ORTHO05D006519 2.8e-93 347.1 532 44.5
CSS0024486 Camellia sinensis var. sinensis HOM05D005142 ORTHO05D006519 6.2e-93 345.9 571 43.6
COL.COLO4_31207 Corchorus olitorius HOM05D005142 ORTHO05D006519 1.2e-91 341.7 602 43.5
QL08p051359 Quercus lobata HOM05D005142 ORTHO05D006519 1.2e-91 341.7 539 47.7
QL93p0336_0055 Quercus lobata HOM05D005142 ORTHO05D006519 2.0e-91 340.9 539 47.5
Actinidia09572 Actinidia chinensis HOM05D005142 ORTHO05D006519 8.3e-90 335.5 598 44.1
Hma1.2p1_0033F.1_g020810 Hydrangea macrophylla HOM05D005142 ORTHO05D006519 4.1e-89 333.2 533 43.9
Haze_16720 Corylus avellana HOM05D005142 ORTHO05D006519 2.1e-88 330.9 545 43.7
Manes.05G042700 Manihot esculenta HOM05D005142 ORTHO05D006519 3.3e-86 323.6 622 41.3
Cfa001828 Carpinus fangiana HOM05D005142 ORTHO05D006519 4.3e-86 323.2 543 42.7
Actinidia31444 Actinidia chinensis HOM05D005142 ORTHO05D006519 2.1e-85 320.9 597 42.9
MBI04_g22605_MAGBIO Magnolia biondii HOM05D005142 ORTHO05D006519 3.6e-85 320.1 608 42.3
Rhsim07G0023700 Rhododendron simsii HOM05D005142 ORTHO05D006519 8.1e-85 318.9 548 42.5
vmacro13362 Vaccinium macrocarpon HOM05D005142 ORTHO05D006519 4.0e-84 316.6 678 38.6
CiPaw.02G165000 Carya illinoinensis HOM05D005142 ORTHO05D006519 2.6e-83 313.9 568 43.7
Nitab4.5_0002436g0100 Nicotiana tabacum HOM05D005142 ORTHO05D006519 2.2e-82 310.8 600 40.5
CiPaw.01G259000 Carya illinoinensis HOM05D005142 ORTHO05D006519 1.9e-81 307.8 610 40.8
Dinv43736 Davidia involucrata HOM05D005142 ORTHO05D006519 2.4e-81 307.4 303 58.7
Duzib138G0662 Durio zibethinus HOM05D005142 ORTHO05D006519 2.3e-79 300.8 614 40.1
Atru.chr5.361 Acer truncatum HOM05D005142 ORTHO05D006519 2.5e-78 297.4 604 42.9
Solyc01g094000.3 Solanum lycopersicum HOM05D005142 ORTHO05D006519 4.3e-78 296.6 599 38.6
Sopen01g037820 Solanum pennellii HOM05D005142 ORTHO05D006519 4.3e-78 296.6 605 38.5
CANSAT56G4462 Cannabis sativa HOM05D005142 ORTHO05D006519 7.3e-78 295.8 601 38.9
Ciclev10023615m.g Citrus clementina HOM05D005142 ORTHO05D006519 2.8e-77 293.9 598 41.5
Cpa.g.sc18.161 Carica papaya HOM05D005142 ORTHO05D006519 1.2e-75 288.5 605 39.0
Nitab4.5_0008042g0040 Nicotiana tabacum HOM05D005142 ORTHO05D006519 4.4e-75 286.6 539 39.9
TWI14G0649 Tripterygium wilfordii HOM05D005142 ORTHO05D006519 9.9e-75 285.4 540 42.0
Gorai.007G093300 Gossypium raimondii HOM05D005142 ORTHO05D006519 3.8e-74 283.5 598 38.8
PSO782G2935 Papaver somniferum HOM05D005142 ORTHO05D006519 8.4e-74 282.3 541 39.9
Gohir.A12G102600 Gossypium hirsutum HOM05D005142 ORTHO05D006519 3.2e-73 280.4 610 39.5
Gohir.A11G083300 Gossypium hirsutum HOM05D005142 ORTHO05D006519 7.1e-73 279.3 595 38.3
Gorai.008G115100 Gossypium raimondii HOM05D005142 ORTHO05D006519 1.2e-72 278.5 611 39.4
Gohir.D12G105800 Gossypium hirsutum HOM05D005142 ORTHO05D006519 2.7e-72 277.3 605 39.5
FAN06G0597 Fragaria x ananassa HOM05D005142 ORTHO05D006519 3.5e-72 276.9 609 38.8
Gohir.D11G087400 Gossypium hirsutum HOM05D005142 ORTHO05D006519 4.6e-72 276.6 594 37.7
Gohir.D11G087460 Gossypium hirsutum HOM05D005142 ORTHO05D006519 4.6e-72 276.6 594 37.7
FAN06G0957 Fragaria x ananassa HOM05D005142 ORTHO05D006519 5.1e-71 273.1 610 38.7
PSO478G0855 Papaver somniferum HOM05D005142 ORTHO05D006519 6.6e-71 272.7 540 40.2
FAN10G3320 Fragaria x ananassa HOM05D005142 ORTHO05D006519 1.5e-70 271.6 611 38.3
FAN03G1702 Fragaria x ananassa HOM05D005142 ORTHO05D006519 1.9e-70 271.2 608 37.5
FvH4_7g12540 Fragaria vesca HOM05D005142 ORTHO05D006519 4.3e-70 270.0 610 38.5
FAN10G1433 Fragaria x ananassa HOM05D005142 ORTHO05D006519 4.3e-70 270.0 611 38.5
MD02G1198200 Malus domestica HOM05D005142 ORTHO05D006519 1.4e-68 265.0 538 39.6
FAN01G1647 Fragaria x ananassa HOM05D005142 ORTHO05D006519 3.1e-68 263.8 610 38.2
PGSC0003DMG400000138 Solanum tuberosum HOM05D005142 ORTHO05D006519 1.5e-67 261.5 528 37.3
GSVIVG01027570001 Vitis vinifera HOM05D005142 ORTHO05D006519 1.5e-67 261.5 336 50.3
RcHm_v2.0_Chr1g0351451 Rosa chinensis HOM05D005142 ORTHO05D006519 2.0e-67 261.2 551 39.0
PGR031G2766 Punica granatum HOM05D005142 ORTHO05D006519 8.4e-66 255.8 602 38.2
Hund27339 Selenicereus undatus HOM05D005142 ORTHO05D006519 1.1e-65 255.4 535 38.1
Cc00_g19600 Coffea canephora HOM05D005142 ORTHO05D006519 4.2e-65 253.4 607 39.4
THA.LOC104802001 Tarenaya hassleriana HOM05D005142 ORTHO05D006519 1.6e-64 251.5 620 39.0
Sc02g0002360 Simmondsia chinensis HOM05D005142 ORTHO05D006519 2.1e-64 251.1 593 37.6
Potri.002G151000 Populus trichocarpa HOM05D005142 ORTHO05D006519 4.6e-64 250.0 609 37.9
Lalb_Chr07g0189491 Lupinus albus HOM05D005142 ORTHO05D006519 8.7e-63 245.7 602 38.9
Phvul.010G086700 Phaseolus vulgaris HOM05D005142 ORTHO05D006519 2.5e-62 244.2 605 36.9
CARHR140840 Cardamine hirsuta HOM05D005142 ORTHO05D006519 4.3e-62 243.4 608 39.1
Lsat_1_v5_gn_3_135321 Lactuca sativa HOM05D005142 ORTHO05D006519 1.6e-61 241.5 534 37.3
Peaxi162Scf00988g00323 Petunia axillaris HOM05D005142 ORTHO05D006519 3.6e-61 240.4 541 37.5
Potri.014G073300 Populus trichocarpa HOM05D005142 ORTHO05D006519 2.4e-60 237.7 621 36.9
MSTRG.20775 Avicennia marina HOM05D005142 ORTHO05D006519 6.9e-60 236.1 610 37.5
EL10Ac1g00917 Beta vulgaris HOM05D005142 ORTHO05D006519 2.0e-59 234.6 313 51.8
Eucgr.D02430 Eucalyptus grandis HOM05D005142 ORTHO05D006519 4.5e-59 233.4 399 43.9
TWI23G0741 Tripterygium wilfordii HOM05D005142 ORTHO05D006519 5.8e-59 233.0 604 37.3
Lj3g0017003 Lotus japonicus HOM05D005142 ORTHO05D006519 7.6e-59 232.6 606 36.6
Oeu008624.1 Olea europaea HOM05D005142 ORTHO05D006519 9.9e-59 232.3 604 35.3
Psat4g150880 Pisum sativum HOM05D005142 ORTHO05D006519 2.2e-58 231.1 611 34.4
Glyma.07G082200 Glycine max HOM05D005142 ORTHO05D006519 2.9e-58 230.7 616 35.9
Aa31LG1G27100 Aethionema arabicum HOM05D005142 ORTHO05D006519 6.4e-58 229.6 612 35.3
THA.LOC104827620 Tarenaya hassleriana HOM05D005142 ORTHO05D006519 1.1e-57 228.8 602 37.5
AT2G45620 Arabidopsis thaliana HOM05D005142 ORTHO05D006519 5.4e-57 226.5 614 36.2
AUR62004260 Chenopodium quinoa HOM05D005142 ORTHO05D006519 2.1e-56 224.6 316 49.1
Sp4g27670 Schrenkiella parvula HOM05D005142 ORTHO05D006519 2.1e-56 224.6 616 36.9
AL4G44790 Arabidopsis lyrata HOM05D005142 ORTHO05D006519 2.7e-56 224.2 614 36.6
Lalb_Chr12g0208461 Lupinus albus HOM05D005142 ORTHO05D006519 4.6e-56 223.4 293 47.8
Thhalv10001324m.g Eutrema salsugineum HOM05D005142 ORTHO05D006519 7.9e-56 222.6 609 37.8
ClCG06G000240 Citrullus lanatus HOM05D005142 ORTHO05D006519 3.9e-55 220.3 627 34.9
Carub.0004s2826 Capsella rubella HOM05D005142 ORTHO05D006519 5.1e-55 219.9 625 36.8
VMungo0331G0422 Vigna mungo HOM05D005142 ORTHO05D006519 2.5e-54 217.6 615 34.6
Ca_20180_v3 Cicer arietinum L. HOM05D005142 ORTHO05D006519 7.4e-54 216.1 601 35.4
Ca_20181_v3 Cicer arietinum L. HOM05D005142 ORTHO05D006519 7.4e-54 216.1 601 35.4
CsaV3_6G006030 Cucumis sativus L. HOM05D005142 ORTHO05D006519 2.1e-53 214.5 606 36.1
Sabra14G0052300 Salix brachista HOM05D005142 ORTHO05D006519 3.1e-52 210.7 570 37.4
ECA240G0324 Erigeron canadensis HOM05D005142 ORTHO05D006519 2.0e-51 208.0 239 52.7
TPR.G15434 Trifolium pratense HOM05D005142 ORTHO05D006519 5.8e-51 206.5 615 34.8
MELO3C022514.2 Cucumis melo HOM05D005142 ORTHO05D006519 9.9e-51 205.7 603 35.8
HanXRQChr03g0093651 Helianthus annuus HOM05D005142 ORTHO05D006519 1.9e-49 201.4 592 35.8
SalBow7G2728 Salvia bowleyana HOM05D005142 ORTHO05D006519 3.2e-49 200.7 606 35.6
DCAR_008569 Daucus carota HOM05D005142 ORTHO05D006519 4.2e-49 200.3 380 41.3
C04p71740 Brassica napus HOM05D005142 ORTHO05D006519 3.5e-48 197.2 238 50.0
Ah.05g175530 Amaranthus hybridus HOM05D005142 ORTHO05D006519 4.6e-48 196.8 302 45.0
Glyma.03G020100 Glycine max HOM05D005142 ORTHO05D006519 1.8e-47 194.9 614 33.4
BcaB06g29434 Brassica carinata HOM05D005142 ORTHO05D006519 2.3e-47 194.5 553 33.5
SGA_v2.0_scaffold153G37048 Striga asiatica HOM05D005142 ORTHO05D006519 5.1e-47 193.4 653 32.3
Sed0025531 Sechium edule HOM05D005142 ORTHO05D006519 8.7e-47 192.6 629 33.1
BolC4t28673H Brassica oleracea HOM05D005142 ORTHO05D006519 1.6e-45 188.3 537 35.0
BcaC02g07079 Brassica carinata HOM05D005142 ORTHO05D006519 6.2e-45 186.4 538 34.0
A04p33930 Brassica napus HOM05D005142 ORTHO05D006519 2.4e-44 184.5 531 34.8
SGA_v2.0_scaffold95G28881 Striga asiatica HOM05D005142 ORTHO05D006519 1.5e-43 181.8 620 32.6
BraA04t18854Z Brassica rapa HOM05D005142 ORTHO05D006519 3.4e-43 180.6 550 33.6
Sabra02G0119300 Salix brachista HOM05D005142 ORTHO05D006519 1.7e-42 178.3 215 53.5
ATR0661G093 Amborella trichopoda HOM05D005142 ORTHO05D006519 4.2e-41 173.7 636 31.9
Migut.B01666 Erythranthe guttata HOM05D005142 ORTHO05D006519 6.1e-40 169.9 609 33.0
Medtr8g033420 Medicago truncatula HOM05D005142 ORTHO05D006519 1.0e-39 169.1 129 69.8
Zm00001eb224220 Zea mays HOM05D005142 ORTHO05D006519 3.7e-37 160.6 608 32.1
CDE02G2105 Ceratophyllum demersum HOM05D005142 ORTHO05D006519 4.8e-37 160.2 164 54.3
VMungo0331G1088 Vigna mungo HOM05D005142 ORTHO05D006519 5.9e-35 153.3 148 57.4
CDE02G0581 Ceratophyllum demersum HOM05D005142 ORTHO05D006519 2.9e-34 151.0 251 41.0
unitig_0.g1293 Utricularia gibba HOM05D005142 ORTHO05D006519 1.6e-32 145.2 597 31.2
HPP92_014573 Vanilla planifolia HOM05D005142 ORTHO05D006519 1.6e-32 145.2 130 60.8
Os10g0188300 Oryza sativa ssp. japonica HOM05D005142 ORTHO05D006519 2.1e-32 144.8 143 53.1
Gorai.010G161200 Gossypium raimondii HOM05D005142 ORTHO05D006519 9.7e-30 136.0 101 72.3
Mapoly0079s0057 Marchantia polymorpha HOM05D005142 ORTHO05D006519 2.4e-28 131.3 238 36.6
SEGI_20485 Sequoiadendron giganteum HOM05D005142 ORTHO05D006519 4.1e-28 130.6 253 36.0
AagrBONN_evm.TU.Sc2ySwM_117.1828 Anthoceros agrestis HOM05D005142 ORTHO05D006519 2.3e-23 114.8 236 33.9
Os02g0122100 Oryza sativa ssp. japonica HOM05D005142 ORTHO05D006519 8.8e-23 112.8 116 51.7
EL10Ac8g19930 Beta vulgaris HOM05D005142 ORTHO05D006519 4.4e-22 110.5 69 78.3
Migut.N01409 Erythranthe guttata HOM05D005142 ORTHO05D006519 7.4e-22 109.8 111 46.8
HPP92_014586 Vanilla planifolia HOM05D005142 ORTHO05D006519 1.3e-21 109.0 78 70.5
Zm00001eb230480 Zea mays HOM05D005142 ORTHO05D006519 2.8e-21 107.8 103 50.5
Pp3c2_23720 Physcomitrium patens HOM05D005142 ORTHO05D006519 1.1e-20 105.9 251 30.7
SMO144G0107 Selaginella moellendorffii HOM05D005142 ORTHO05D006519 1.5e-19 102.1 107 43.9
Prupe.2G149800 Prunus persica HOM05D005142 ORTHO05D006519 8.0e-16 89.7 354 31.4
SMO226G0009 Selaginella moellendorffii HOM05D013304 ORTHO05D375547 3.3e-14 84.3 226 29.2
SMO226G0017 Selaginella moellendorffii HOM05D013304 ORTHO05D377335 1.1e-09 69.3 83 38.6
Solyc02g055390.2 Solanum lycopersicum HOM05D005142 ORTHO05D006519 5.5e-09 67.0 148 33.1
PRCOL_00001638 Prasinoderma coloniale HOM05D005142 ORTHO05D006519 2.3e-07 61.6 118 28.8


User provided reference genes

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