Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.1e-238 828.6 404 100.0
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.2e-142 509.6 256 96.5
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 4.2e-117 425.6 482 52.9
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.5e-116 422.5 475 52.6
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 2.5e-114 416.4 475 51.8
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 1.6e-113 413.7 478 51.0
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 2.8e-113 412.9 483 51.1
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 2.8e-113 412.9 481 50.7
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 2.8e-113 412.9 481 50.9
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 6.2e-113 411.8 461 52.1
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 6.2e-113 411.8 476 50.2
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 1.1e-112 411.0 483 50.3
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 1.4e-112 410.6 483 50.9
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 1.4e-112 410.6 481 50.5
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 2.4e-112 409.8 480 50.0
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 3.1e-112 409.5 480 50.2
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 3.1e-112 409.5 479 49.9
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 3.1e-112 409.5 446 52.2
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 3.1e-112 409.5 481 50.5
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 5.3e-112 408.7 481 50.5
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 5.3e-112 408.7 481 50.7
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 5.3e-112 408.7 485 49.9
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.3e-112 408.7 478 52.7
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 2.6e-111 406.4 476 50.6
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 2.6e-111 406.4 420 54.5
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 4.5e-111 405.6 467 51.6
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 4.5e-111 405.6 420 53.6
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 5.8e-111 405.2 485 50.5
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 1.3e-110 404.1 478 50.6
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 1.3e-110 404.1 487 49.5
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 1.3e-110 404.1 462 50.0
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 2.2e-110 403.3 472 50.2
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 2.9e-110 402.9 523 47.8
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 2.9e-110 402.9 420 53.6
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 2.9e-110 402.9 463 49.9
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 3.8e-110 402.5 486 49.8
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 4.9e-110 402.1 491 50.3
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 4.9e-110 402.1 487 49.3
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 4.9e-110 402.1 486 49.0
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 6.4e-110 401.7 487 49.3
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 6.4e-110 401.7 483 49.9
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 8.4e-110 401.4 528 47.0
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 8.4e-110 401.4 485 49.7
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 8.4e-110 401.4 485 48.7
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 1.4e-109 400.6 420 52.6
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 1.9e-109 400.2 462 49.8
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 1.9e-109 400.2 489 49.3
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 2.4e-109 399.8 487 49.5
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 4.2e-109 399.1 479 49.1
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 5.5e-109 398.7 486 48.4
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 7.1e-109 398.3 420 52.1
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 7.1e-109 398.3 420 52.4
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 9.3e-109 397.9 488 48.8
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 2.1e-108 396.7 420 52.4
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 2.1e-108 396.7 483 48.7
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 2.7e-108 396.4 421 54.9
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 2.7e-108 396.4 420 52.6
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.5e-108 396.0 467 50.7
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 3.5e-108 396.0 414 53.4
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 3.5e-108 396.0 414 53.4
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 3.5e-108 396.0 483 48.7
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 3.5e-108 396.0 482 49.4
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 3.5e-108 396.0 414 53.1
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 3.5e-108 396.0 414 53.6
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 3.5e-108 396.0 500 48.6
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 4.6e-108 395.6 480 49.6
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 7.9e-108 394.8 471 48.8
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 1.0e-107 394.4 478 48.1
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 1.0e-107 394.4 432 52.3
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.8e-107 393.7 419 52.0
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.8e-107 393.7 422 51.7
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 2.3e-107 393.3 432 52.3
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.3e-107 393.3 444 51.1
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 3.0e-107 392.9 420 51.4
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 3.0e-107 392.9 479 49.5
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 5.1e-107 392.1 468 48.3
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 5.1e-107 392.1 444 50.0
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 6.7e-107 391.7 414 52.4
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 6.7e-107 391.7 420 51.9
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 6.7e-107 391.7 444 51.1
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 8.7e-107 391.3 422 51.4
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 8.7e-107 391.3 422 51.7
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 8.7e-107 391.3 420 53.1
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 8.7e-107 391.3 420 51.7
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 1.1e-106 391.0 452 49.8
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 1.1e-106 391.0 472 48.5
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 1.5e-106 390.6 417 51.6
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 1.9e-106 390.2 450 49.6
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 2.5e-106 389.8 432 50.9
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 2.5e-106 389.8 422 51.7
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 2.5e-106 389.8 381 57.5
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 3.3e-106 389.4 417 51.3
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.3e-106 389.0 444 50.7
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 4.3e-106 389.0 423 51.8
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 5.6e-106 388.7 420 50.7
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 5.6e-106 388.7 389 56.3
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 5.6e-106 388.7 371 56.9
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 9.6e-106 387.9 414 51.7
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 9.6e-106 387.9 414 51.7
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 1.3e-105 387.5 450 50.9
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 2.1e-105 386.7 448 49.3
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 2.1e-105 386.7 421 52.7
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 2.8e-105 386.3 421 51.5
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 4.8e-105 385.6 422 50.9
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 6.2e-105 385.2 486 48.4
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 6.2e-105 385.2 434 51.6
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 1.1e-104 384.4 420 51.2
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.1e-104 384.4 454 50.0
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 1.4e-104 384.0 480 48.1
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.4e-104 384.0 243 81.9
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 6.9e-104 381.7 429 50.6
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 1.2e-103 380.9 440 51.1
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 1.2e-103 380.9 441 49.0
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 4.5e-103 379.0 374 57.8
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 5.8e-103 378.6 489 48.1
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 2.9e-102 376.3 398 52.8
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 9.3e-101 371.3 251 78.5
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 3.5e-100 369.4 420 49.3
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.8e-99 367.1 395 54.2
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 2.3e-99 366.7 324 59.0
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 3.9e-99 365.9 419 48.9
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 3.9e-99 365.9 395 53.9
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 1.1e-98 364.4 389 53.2
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 1.5e-98 364.0 425 50.8
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 7.4e-98 361.7 371 54.4
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 1.1e-96 357.8 420 48.8
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 7.6e-95 351.7 331 58.0
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 2.9e-94 349.7 392 52.0
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 4.2e-93 345.9 317 56.8
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 5.5e-93 345.5 472 45.6
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 6.1e-92 342.0 392 51.3
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 2.5e-90 336.7 421 49.4
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 1.2e-87 327.8 434 46.5
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 3.8e-86 322.8 445 43.6
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 2.7e-84 316.6 357 50.7
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.4e-80 304.3 278 56.8
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.5e-79 300.8 389 48.1
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 5.9e-79 298.9 325 51.4
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 5.9e-79 298.9 325 51.4
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 3.6e-76 289.7 315 51.7
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 3.3e-74 283.1 415 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 5.7e-74 282.3 413 42.9
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 2.9e-70 270.0 389 45.0
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 8.0e-68 261.9 344 43.9
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 2.6e-66 256.9 321 48.3
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 1.1e-64 251.5 269 49.4
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 1.1e-61 241.5 245 52.2
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 7.0e-56 222.2 364 42.6
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 1.1e-53 214.9 242 50.8
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.9e-46 190.3 257 47.1
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 5.0e-46 189.5 158 58.9
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 9.2e-40 168.7 215 49.3
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.3e-38 164.9 213 48.4
Cc00_g28580 Coffea canephora HOM05D003708 ORTHO05D004452 1.2e-34 151.8 161 52.8
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 1.7e-33 147.9 183 47.5
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 1.1e-32 145.2 87 74.7
TPR.G8954 Trifolium pratense HOM05D003708 ORTHO05D004452 9.2e-32 142.1 99 64.6
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.0e-30 138.7 211 42.7
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 5.8e-26 122.9 219 41.1
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.3e-25 121.7 201 40.8
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 2.2e-25 120.9 165 44.2
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 2.9e-25 120.6 75 69.3
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.9e-25 119.8 201 40.3
SEGI_18999 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.0e-22 112.1 153 39.2
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 3.3e-21 107.1 190 41.6
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.3e-21 106.7 115 53.0
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.6e-20 104.8 111 54.1
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 3.6e-20 103.6 113 51.3
BcaC04g19188 Brassica carinata HOM05D003708 ORTHO05D004452 2.5e-13 80.9 50 68.0
arahy.Tifrunner.gnm1.ann1.UUKH7B Arachis hypogaea HOM05D003708 ORTHO05D000639 5.6e-13 79.7 50 70.0
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 1.6e-12 78.2 79 54.4
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 2.8e-12 77.4 189 35.4
VMungo0720G2093 Vigna mungo HOM05D003708 ORTHO05D004452 1.2e-07 62.0 36 75.0


User provided reference genes

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