Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 0.0e+00 1337.0 654 100.0
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 7.5e-201 704.5 481 75.3
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.7e-200 703.4 480 76.0
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 4.3e-196 688.7 485 72.8
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 4.4e-193 678.7 484 72.5
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 2.1e-190 669.8 481 71.9
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 5.1e-189 665.2 484 71.3
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 2.5e-188 662.9 484 71.1
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 4.3e-188 662.1 483 70.0
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 7.3e-188 661.4 484 71.7
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 4.7e-187 658.7 492 70.3
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 4.7e-187 658.7 485 70.3
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 1.1e-186 657.5 471 71.5
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 1.1e-186 657.5 485 69.7
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 1.4e-186 657.1 486 70.6
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 1.8e-186 656.8 486 69.1
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 1.8e-186 656.8 488 69.9
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 2.3e-186 656.4 484 69.8
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 3.1e-186 656.0 443 74.7
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 5.2e-186 655.2 474 71.5
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 8.9e-186 654.4 482 69.9
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 1.2e-185 654.1 486 70.0
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 1.2e-185 654.1 484 69.4
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 4.4e-185 652.1 484 70.2
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 4.4e-185 652.1 484 70.2
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 4.4e-185 652.1 490 69.6
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 5.8e-185 651.7 482 69.7
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 7.6e-185 651.4 485 68.2
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 7.6e-185 651.4 491 70.1
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 7.6e-185 651.4 491 69.9
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 1.7e-184 650.2 484 70.0
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 2.2e-184 649.8 485 68.5
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 4.9e-184 648.7 487 70.0
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 6.4e-184 648.3 489 69.1
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 6.4e-184 648.3 487 69.4
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 1.1e-183 647.5 486 68.7
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.1e-183 647.5 487 69.4
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 1.4e-183 647.1 486 67.9
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 1.4e-183 647.1 480 68.5
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.4e-183 647.1 486 68.5
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 1.9e-183 646.7 489 67.7
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 2.4e-183 646.4 493 69.0
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 3.2e-183 646.0 481 67.6
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 4.1e-183 645.6 487 68.4
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 4.1e-183 645.6 488 68.6
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 5.4e-183 645.2 481 69.6
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 7.1e-183 644.8 485 67.4
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 7.1e-183 644.8 481 70.9
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 7.1e-183 644.8 487 69.0
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 1.2e-182 644.0 484 69.6
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.2e-182 644.0 468 71.2
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 2.7e-182 642.9 485 69.1
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 3.5e-182 642.5 438 74.4
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 3.5e-182 642.5 526 65.2
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 4.6e-182 642.1 484 67.6
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 4.6e-182 642.1 487 68.4
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 6.0e-182 641.7 485 69.3
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 7.8e-182 641.3 485 69.3
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.0e-181 641.0 474 70.9
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 1.0e-181 641.0 488 69.9
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 1.3e-181 640.6 481 69.2
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 1.7e-181 640.2 485 69.1
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.7e-181 640.2 489 68.1
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 3.0e-181 639.4 489 68.1
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 3.9e-181 639.0 486 68.9
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 1.1e-180 637.5 487 68.8
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 7.3e-180 634.8 444 71.4
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 1.2e-179 634.0 485 67.8
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 2.1e-179 633.3 529 64.7
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.8e-179 632.9 481 69.9
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 2.8e-179 632.9 504 66.7
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 2.8e-179 632.9 524 64.9
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 2.8e-179 632.9 486 67.5
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 4.7e-179 632.1 488 68.0
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 1.1e-178 630.9 494 66.4
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.4e-178 630.6 443 71.1
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 1.4e-178 630.6 503 66.2
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.4e-178 630.6 496 67.5
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 1.8e-178 630.2 455 71.2
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 1.8e-178 630.2 487 67.4
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 1.8e-178 630.2 484 68.6
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 2.4e-178 629.8 483 68.1
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 2.4e-178 629.8 444 73.0
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 2.4e-178 629.8 457 71.1
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 4.0e-178 629.0 449 69.9
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 6.9e-178 628.2 423 73.3
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 1.2e-177 627.5 434 72.4
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 1.2e-177 627.5 444 70.7
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 1.2e-177 627.5 487 68.0
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 1.2e-177 627.5 491 67.6
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.5e-177 627.1 449 70.4
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 1.5e-177 627.1 453 70.9
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.0e-177 626.7 496 67.1
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 2.6e-177 626.3 458 69.7
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 2.6e-177 626.3 487 67.1
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 3.4e-177 625.9 459 69.3
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 3.4e-177 625.9 529 64.1
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.4e-177 625.5 496 66.9
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 7.6e-177 624.8 436 72.0
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 1.3e-176 624.0 436 72.0
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 1.7e-176 623.6 445 70.6
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 3.8e-176 622.5 479 66.6
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.4e-175 620.5 506 66.0
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 1.4e-175 620.5 439 71.5
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 1.9e-175 620.2 443 69.5
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 7.1e-175 618.2 476 67.4
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 2.1e-174 616.7 420 72.9
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 6.0e-174 615.1 485 66.2
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 2.3e-173 613.2 486 67.1
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 5.6e-172 608.6 393 78.1
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.6e-171 607.1 393 77.9
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 5.3e-170 602.1 500 64.6
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 3.8e-168 595.9 492 63.0
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 3.2e-167 592.8 393 75.3
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 4.2e-167 592.4 488 65.8
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 1.3e-165 587.4 419 69.0
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 3.3e-164 582.8 394 74.6
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 4.3e-164 582.4 419 68.5
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 6.2e-163 578.6 485 64.3
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 6.9e-162 575.1 394 73.9
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 9.0e-162 574.7 482 64.3
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 6.4e-160 568.5 484 63.0
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 2.4e-159 566.6 492 62.8
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 2.4e-159 566.6 485 61.9
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 2.4e-154 550.1 474 58.6
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 3.1e-154 549.7 426 65.7
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 3.5e-150 536.2 499 60.9
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 2.2e-144 516.9 423 65.7
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 6.1e-142 508.8 417 61.2
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 2.3e-141 506.9 414 59.9
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 2.5e-140 503.4 426 60.1
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 2.5e-140 503.4 426 60.1
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 3.3e-140 503.1 420 60.5
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 1.0e-136 491.5 342 71.9
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 5.5e-135 485.7 334 73.1
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 2.7e-134 483.4 359 67.7
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 1.4e-130 471.1 320 73.8
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 5.0e-120 436.0 344 65.7
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.5e-119 434.5 438 57.1
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 1.8e-117 427.6 408 54.9
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 8.8e-117 425.2 369 63.4
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.2e-112 410.6 478 52.7
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 5.5e-111 406.0 445 54.4
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 2.9e-104 383.6 260 73.8
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 4.7e-94 349.7 287 58.2
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.4e-84 317.0 211 78.2
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.8e-84 316.2 213 77.0
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 2.3e-80 304.3 244 64.3
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.7e-73 280.8 267 58.4
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 5.1e-72 276.6 211 64.9
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.0e-68 264.6 280 55.0
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.9e-67 260.0 201 64.7
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 9.2e-66 255.8 213 62.4
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.6e-65 253.4 201 64.7
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 9.0e-53 212.6 181 61.3
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 4.3e-47 193.7 160 62.5
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 9.6e-47 192.6 190 55.8
Cc00_g28580 Coffea canephora HOM05D003708 ORTHO05D004452 1.5e-44 185.3 166 61.4
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.1e-41 174.9 110 73.6
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.1e-41 174.9 121 66.9
CBR_g46282 Chara braunii HOM05D003708 ORTHO05D004452 7.9e-41 172.9 157 56.7
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.9e-39 168.3 325 39.7
TPR.G8954 Trifolium pratense HOM05D003708 ORTHO05D004452 3.7e-38 164.1 162 55.6
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 4.8e-38 163.7 118 66.9
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.4e-37 161.4 310 39.7
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 1.3e-35 155.6 235 48.5
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 2.2e-35 154.8 342 37.7
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 1.9e-34 151.8 99 70.7
Nitab4.5_0000308g0370 Nicotiana tabacum HOM05D003708 ORTHO05D004452 7.9e-33 146.4 109 68.8
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 6.7e-32 143.3 79 83.5
SEGI_18999 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.4e-26 125.6 118 54.2
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 1.7e-22 112.1 67 74.6
Peaxi162Scf00286g00237 Petunia axillaris HOM05D003708 ORTHO05D004452 4.5e-20 104.0 75 72.0
VMungo0720G2093 Vigna mungo HOM05D003708 ORTHO05D004452 1.4e-16 92.4 56 75.0
CANSAT25G3134 Cannabis sativa HOM05D003708 ORTHO05D004452 1.1e-15 89.4 92 53.3
BcaC04g19188 Brassica carinata HOM05D003708 ORTHO05D004452 7.4e-15 86.7 119 47.1
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 6.3e-14 83.6 372 25.0
CDE11G0718 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.8e-13 82.0 54 74.1
TAR365G0800 Trochodendron aralioides HOM05D000127 ORTHO05D000792 4.1e-13 80.9 50 82.0
arahy.Tifrunner.gnm1.ann1.UUKH7B Arachis hypogaea HOM05D003708 ORTHO05D000639 1.3e-11 75.9 50 66.0
CDE08G1076 Ceratophyllum demersum HOM05D000127 ORTHO05D000792 3.7e-06 57.8 81 43.2
MBI18_g03879_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D000792 3.7e-06 57.8 76 43.4
Peaxi162Scf01320g00019 Petunia axillaris HOM05D000176 ORTHO05D000106 4.8e-06 57.4 47 55.3
GSVIVG01017721001 Vitis vinifera HOM05D000127 ORTHO05D000792 4.8e-06 57.4 50 64.0
Actinidia27884 Actinidia chinensis HOM05D003708 ORTHO05D053587 6.3e-06 57.0 51 60.8
CDE01G0347 Ceratophyllum demersum HOM05D000127 ORTHO05D000792 6.3e-06 57.0 101 38.6


User provided reference genes

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