Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.0e-135 485.7 235 100.0
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.4e-125 452.2 233 96.1
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.2e-101 372.1 251 78.5
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 3.1e-48 196.1 303 43.9
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 4.1e-48 195.7 321 42.7
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 1.6e-47 193.7 321 42.4
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 2.0e-47 193.4 321 41.7
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 2.6e-47 193.0 321 41.7
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 3.5e-47 192.6 321 41.7
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 4.5e-47 192.2 321 41.4
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 4.5e-47 192.2 321 42.1
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 5.9e-47 191.8 321 42.1
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 5.9e-47 191.8 315 42.5
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 7.7e-47 191.4 321 41.4
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 1.0e-46 191.0 321 42.1
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 1.0e-46 191.0 321 41.1
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 1.3e-46 190.7 321 41.4
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 1.7e-46 190.3 321 41.4
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 2.2e-46 189.9 315 41.3
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 2.2e-46 189.9 315 41.3
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.2e-46 189.9 321 40.8
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 2.2e-46 189.9 319 41.4
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 2.2e-46 189.9 321 41.4
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 3.8e-46 189.1 321 40.5
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 3.8e-46 189.1 321 41.4
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 5.0e-46 188.7 321 40.5
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 5.0e-46 188.7 321 40.5
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 8.5e-46 188.0 286 45.1
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 8.5e-46 188.0 319 41.1
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 8.5e-46 188.0 321 41.7
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 1.1e-45 187.6 321 40.8
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 1.5e-45 187.2 321 41.1
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 1.5e-45 187.2 298 41.9
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 1.5e-45 187.2 321 40.8
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 1.5e-45 187.2 321 41.7
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.9e-45 186.8 321 41.1
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 1.9e-45 186.8 321 41.4
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 1.9e-45 186.8 320 40.9
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 1.9e-45 186.8 321 41.1
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 1.9e-45 186.8 321 40.5
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 1.9e-45 186.8 321 40.8
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 2.5e-45 186.4 321 40.5
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 3.2e-45 186.0 321 40.5
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 4.2e-45 185.7 321 40.5
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 4.2e-45 185.7 321 39.6
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 4.2e-45 185.7 315 41.3
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 5.5e-45 185.3 315 41.0
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 5.5e-45 185.3 315 41.0
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 5.5e-45 185.3 311 41.2
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 7.2e-45 184.9 321 40.2
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 9.4e-45 184.5 321 41.4
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 9.4e-45 184.5 321 40.2
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 1.2e-44 184.1 321 39.9
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 2.1e-44 183.3 321 39.9
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 3.6e-44 182.6 315 40.6
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 3.6e-44 182.6 321 40.2
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 3.6e-44 182.6 321 39.6
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 3.6e-44 182.6 321 40.5
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 3.6e-44 182.6 315 40.6
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 4.7e-44 182.2 321 39.3
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 6.1e-44 181.8 321 40.5
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 8.0e-44 181.4 296 41.2
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 8.0e-44 181.4 321 39.6
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 8.0e-44 181.4 321 40.2
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 8.0e-44 181.4 315 40.0
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 8.0e-44 181.4 321 39.6
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 1.0e-43 181.0 321 39.9
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 1.0e-43 181.0 323 39.9
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.4e-43 180.6 321 41.1
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 1.4e-43 180.6 321 39.6
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.4e-43 180.6 321 39.3
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 1.8e-43 180.3 321 39.3
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 1.8e-43 180.3 321 40.5
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 2.3e-43 179.9 321 39.3
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 2.3e-43 179.9 321 39.3
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 2.3e-43 179.9 321 39.6
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 3.0e-43 179.5 321 39.6
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 3.0e-43 179.5 321 39.6
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 4.0e-43 179.1 321 39.3
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 4.0e-43 179.1 321 39.3
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 6.7e-43 178.3 321 38.6
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 6.7e-43 178.3 321 38.9
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 6.7e-43 178.3 322 39.4
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 8.8e-43 177.9 321 38.9
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 8.8e-43 177.9 321 38.9
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 8.8e-43 177.9 321 39.3
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 1.1e-42 177.6 321 38.9
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 1.5e-42 177.2 321 38.9
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 1.5e-42 177.2 321 38.9
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 1.5e-42 177.2 321 38.9
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 1.5e-42 177.2 321 40.2
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 2.0e-42 176.8 315 39.0
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 2.0e-42 176.8 321 40.2
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 2.0e-42 176.8 272 43.4
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 2.6e-42 176.4 302 41.4
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 2.6e-42 176.4 321 38.6
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 2.6e-42 176.4 321 38.6
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 3.3e-42 176.0 321 38.6
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 3.3e-42 176.0 321 38.9
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 3.3e-42 176.0 321 39.9
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 4.4e-42 175.6 343 38.5
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 4.4e-42 175.6 321 39.6
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 5.7e-42 175.3 321 38.6
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 9.7e-42 174.5 315 38.7
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 1.3e-41 174.1 315 38.7
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 1.3e-41 174.1 315 38.7
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 1.3e-41 174.1 315 38.7
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.3e-41 174.1 333 38.7
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 1.7e-41 173.7 366 36.9
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.7e-41 173.7 333 38.7
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 1.7e-41 173.7 321 38.6
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 2.2e-41 173.3 321 40.2
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 3.7e-41 172.6 331 37.5
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 3.7e-41 172.6 308 39.6
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 3.7e-41 172.6 335 38.8
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 3.7e-41 172.6 321 38.6
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.8e-41 172.2 333 38.7
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 6.3e-41 171.8 361 37.4
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.1e-40 171.0 321 37.7
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.1e-40 171.0 104 83.7
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 1.4e-40 170.6 226 48.7
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 1.8e-40 170.2 319 38.2
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 3.1e-40 169.5 321 38.6
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 9.1e-40 167.9 320 37.5
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 9.1e-40 167.9 321 37.7
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 2.7e-39 166.4 226 47.8
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 4.5e-39 165.6 325 39.7
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 5.9e-39 165.2 226 46.9
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 5.9e-39 165.2 211 49.3
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 1.0e-38 164.5 259 42.1
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 2.2e-38 163.3 321 37.4
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 3.2e-37 159.5 226 45.6
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 8.0e-36 154.8 211 44.5
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.7e-33 147.1 365 34.8
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 6.3e-33 145.2 142 57.0
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 8.3e-33 144.8 315 34.9
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 1.4e-32 144.1 240 40.8
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 3.8e-30 136.0 337 32.0
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 1.6e-28 130.6 203 44.8
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 6.1e-28 128.6 226 39.8
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 6.1e-28 128.6 226 39.8
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 8.8e-27 124.8 183 45.9
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 7.5e-26 121.7 211 40.3
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 3.7e-25 119.4 142 47.9
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 7.7e-23 111.7 211 39.3
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 1.1e-21 107.8 211 36.5
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.5e-21 106.7 213 38.5
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 2.5e-21 106.7 208 39.9
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 4.7e-20 102.4 142 42.3
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 1.8e-19 100.5 78 62.8
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.0e-18 97.1 215 36.7
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 3.4e-18 96.3 61 70.5
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 7.5e-18 95.1 142 43.0
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 9.8e-18 94.7 213 36.2
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.9e-17 93.2 115 47.0
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 4.9e-17 92.4 114 47.4
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 6.4e-17 92.0 113 47.8
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 8.3e-17 91.7 111 47.7
arahy.Tifrunner.gnm1.ann1.UUKH7B Arachis hypogaea HOM05D003708 ORTHO05D000639 1.6e-12 77.4 91 46.2
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.8e-11 73.9 211 31.3
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 3.1e-11 73.2 114 40.4
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 3.1e-11 73.2 163 35.6
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 1.3e-09 67.8 79 48.1
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 2.2e-09 67.0 113 39.8
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.9e-09 65.9 201 30.8
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 5.4e-08 62.4 201 29.9
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 3.9e-06 56.2 60 51.7
VMungo0720G2093 Vigna mungo HOM05D003708 ORTHO05D004452 3.9e-06 56.2 37 67.6


User provided reference genes

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