Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1726.1 855 100.0
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1427.5 850 81.4
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1411.4 846 80.1
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1402.1 848 80.3
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1396.7 848 80.1
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1395.2 850 79.8
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1394.8 846 80.1
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1392.5 846 79.3
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1387.1 819 82.3
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1379.4 848 78.7
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1377.5 848 78.9
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1361.3 848 78.4
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1360.1 849 77.9
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1360.1 846 78.3
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1360.1 851 76.0
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1349.0 848 78.3
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1349.0 848 77.7
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1346.3 849 77.0
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1344.3 848 77.6
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1343.2 846 78.0
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1342.8 846 77.0
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1342.0 846 77.7
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1342.0 846 77.9
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1334.3 847 75.7
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1333.2 848 77.0
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1332.8 847 75.8
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1332.8 856 76.5
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1332.8 847 75.7
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1330.9 856 76.4
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1330.1 848 76.9
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1318.5 845 75.4
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1313.9 849 74.8
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1313.5 848 75.5
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1313.1 846 75.7
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1310.4 848 75.6
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1307.0 846 74.9
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1306.6 858 75.4
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1300.0 827 76.7
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1298.5 853 73.5
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1298.5 844 75.0
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1295.8 879 72.5
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1295.4 851 74.6
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1295.0 844 75.0
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1294.6 846 74.2
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1287.3 848 74.6
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1281.9 846 73.5
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1280.0 846 73.3
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1278.8 856 73.1
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1278.5 828 74.0
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1274.6 846 72.8
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1273.8 848 72.9
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1270.0 901 70.0
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1266.5 846 73.4
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1266.5 852 72.5
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1263.8 845 71.7
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1262.3 848 72.6
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1260.7 845 73.0
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1260.4 845 72.1
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1259.6 848 71.8
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1259.2 848 72.4
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1258.0 848 72.1
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1255.4 848 72.8
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1253.8 848 72.5
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1253.0 857 71.8
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1250.7 888 69.9
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1248.4 861 71.3
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1246.9 848 71.9
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1246.5 848 72.2
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1246.5 849 71.7
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1246.1 848 71.9
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1245.7 845 72.0
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1242.6 842 73.6
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1238.8 909 69.5
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1236.5 857 71.3
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1235.7 848 71.8
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1233.4 848 71.6
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1224.2 886 69.1
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1220.3 851 70.7
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1219.5 815 71.4
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1216.8 853 68.7
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1215.7 815 71.4
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1213.4 855 69.2
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1201.4 850 69.6
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1200.3 844 70.9
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1196.4 856 68.7
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1196.0 836 69.5
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1165.2 848 68.0
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1155.2 934 63.0
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1149.8 852 67.4
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1144.8 966 61.2
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 0.0e+00 1120.1 688 79.9
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1114.4 834 66.8
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1102.8 862 64.6
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 9.2e-308 1060.1 776 69.3
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.5e-307 1058.1 767 69.5
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 1.0e-306 1056.6 689 73.4
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 3.4e-294 1015.0 827 61.1
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 4.5e-278 961.4 848 59.1
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.8e-274 949.5 641 71.9
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 1.1e-252 877.1 687 62.4
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 9.1e-247 857.4 855 52.0
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 2.6e-246 855.9 868 52.1
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 9.7e-241 837.4 508 79.7
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 2.0e-238 829.7 859 51.3
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 1.9e-212 743.4 516 72.3
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.7e-208 730.3 861 47.3
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 1.2e-206 724.2 536 69.6
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 4.3e-180 636.0 434 70.5
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.4e-167 594.3 472 64.6
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.1e-162 578.2 405 72.3
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 1.2e-134 485.0 321 74.1
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.0e-133 481.9 389 62.2
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 7.4e-132 475.7 972 34.6
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 2.8e-94 350.9 239 72.4
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 2.3e-80 304.7 292 55.8
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.2e-75 288.1 225 65.3
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 3.0e-72 277.7 165 79.4
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.5e-68 265.4 233 59.7
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.3e-63 247.7 174 75.3
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 5.6e-63 246.9 181 66.9
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 9.0e-61 239.6 174 66.7
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.3e-56 225.7 181 68.0
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 1.8e-48 198.7 144 67.4
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.3e-40 172.6 170 51.2
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 2.6e-36 158.3 162 51.2
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 1.0e-35 156.4 94 75.5
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 5.7e-31 140.6 89 71.9
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 9.7e-31 139.8 105 64.8
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 3.7e-30 137.9 95 73.7
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.5e-28 131.0 100 62.0
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 5.9e-28 130.6 99 64.6
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 7.7e-28 130.2 90 67.8
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 1.4e-21 109.4 371 28.6
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 5.3e-21 107.5 171 40.9
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.2e-19 102.1 93 53.8
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 1.4e-16 92.8 207 32.4
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 2.3e-16 92.0 218 29.8
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.0e-16 91.7 100 48.0
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 1.1e-15 89.7 317 25.9
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 1.7e-14 85.9 73 60.3
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 8.2e-14 83.6 74 59.5
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 2.0e-12 79.0 53 69.8
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 3.8e-11 74.7 53 67.9
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.4e-08 66.2 41 75.6
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.4e-08 66.2 50 62.0
SMO164G0082 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 9.7e-07 60.1 148 33.8
SMO304G0098 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 8.2e-06 57.0 146 31.5


User provided reference genes

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