Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G1314 Trochodendron aralioides HOM05D004350 ORTHO05D005260 6.2e-91 337.4 169 100.0
MBI16_g27585_MAGBIO Magnolia biondii HOM05D004350 ORTHO05D005260 6.3e-67 257.7 174 73.0
TAR381G0377 Trochodendron aralioides HOM05D004350 ORTHO05D005260 3.5e-65 251.9 213 62.9
PGR031G0248 Punica granatum HOM05D004350 ORTHO05D005260 4.2e-63 245.0 199 63.8
vmacro18559 Vaccinium macrocarpon HOM05D004350 ORTHO05D005260 7.2e-63 244.2 199 63.3
Nn1g05564 Nelumbo nucifera HOM05D004350 ORTHO05D005260 1.4e-61 240.0 199 62.3
PSO017G6956 Papaver somniferum HOM05D004350 ORTHO05D005260 2.3e-61 239.2 199 62.3
PSO170G2632 Papaver somniferum HOM05D004350 ORTHO05D005260 2.3e-61 239.2 199 62.3
PSO170G6309 Papaver somniferum HOM05D004350 ORTHO05D005260 2.3e-61 239.2 199 62.3
CiPaw.08G140000 Carya illinoinensis HOM05D004350 ORTHO05D005260 8.8e-61 237.3 199 60.3
Cfa006886 Carpinus fangiana HOM05D004350 ORTHO05D005260 1.1e-60 236.9 203 59.6
Aqoxy5G01391 Aquilegia oxysepala HOM05D004350 ORTHO05D005260 3.3e-60 235.3 199 60.8
Hma1.2p1_0433F.1_g152050 Hydrangea macrophylla HOM05D004350 ORTHO05D005260 4.4e-60 235.0 199 62.3
Sc03g0000310 Simmondsia chinensis HOM05D004350 ORTHO05D005260 5.7e-60 234.6 199 60.8
Eucgr.K02898 Eucalyptus grandis HOM05D004350 ORTHO05D005260 1.3e-59 233.4 197 61.9
THA.LOC104819292 Tarenaya hassleriana HOM05D004350 ORTHO05D005260 2.2e-59 232.6 199 60.3
HPP92_014310 Vanilla planifolia HOM05D004350 ORTHO05D005260 2.2e-59 232.6 199 59.3
Atru.chr3.1251 Acer truncatum HOM05D004350 ORTHO05D005260 6.3e-59 231.1 212 55.7
Haze_03867 Corylus avellana HOM05D004350 ORTHO05D005260 6.3e-59 231.1 200 60.5
Duzib187G1704 Durio zibethinus HOM05D004350 ORTHO05D005260 1.1e-58 230.3 199 60.3
Actinidia28826 Actinidia chinensis HOM05D004350 ORTHO05D005260 1.4e-58 229.9 199 60.8
Gohir.A11G206700 Gossypium hirsutum HOM05D004350 ORTHO05D005260 1.4e-58 229.9 199 60.3
MD01G1038800 Malus domestica HOM05D004350 ORTHO05D005260 1.4e-58 229.9 199 60.3
Actinidia30847 Actinidia chinensis HOM05D004350 ORTHO05D005260 3.1e-58 228.8 199 60.3
CSS0009628 Camellia sinensis var. sinensis HOM05D004350 ORTHO05D005260 3.1e-58 228.8 199 60.8
PSO541G1644 Papaver somniferum HOM05D004350 ORTHO05D005260 4.1e-58 228.4 199 59.8
ATR0767G219 Amborella trichopoda HOM05D004350 ORTHO05D005260 7.0e-58 227.6 199 58.8
Gorai.007G233000 Gossypium raimondii HOM05D004350 ORTHO05D005260 7.0e-58 227.6 198 60.1
Nn5g29888 Nelumbo nucifera HOM05D004350 ORTHO05D005260 9.1e-58 227.3 199 59.3
Prupe.6G201300 Prunus persica HOM05D004350 ORTHO05D005260 9.1e-58 227.3 199 60.3
Ah.02g123600 Amaranthus hybridus HOM05D004350 ORTHO05D005260 1.6e-57 226.5 175 63.4
CiPaw.07G047800 Carya illinoinensis HOM05D004350 ORTHO05D005260 1.6e-57 226.5 198 58.6
Lj4g0019109 Lotus japonicus HOM05D004350 ORTHO05D005260 1.6e-57 226.5 199 59.3
Potri.007G010900 Populus trichocarpa HOM05D004350 ORTHO05D005260 1.6e-57 226.5 199 57.8
Lalb_Chr05g0216341 Lupinus albus HOM05D004350 ORTHO05D005260 3.5e-57 225.3 199 58.8
Gohir.D11G216900 Gossypium hirsutum HOM05D004350 ORTHO05D005260 4.5e-57 224.9 199 59.8
Manes.13G099500 Manihot esculenta HOM05D004350 ORTHO05D005260 4.5e-57 224.9 199 57.8
THA.LOC104798725 Tarenaya hassleriana HOM05D004350 ORTHO05D005260 4.5e-57 224.9 199 58.8
Duzib264G0362 Durio zibethinus HOM05D004350 ORTHO05D005260 7.7e-57 224.2 199 58.3
CANSAT01G3290 Cannabis sativa HOM05D004350 ORTHO05D005260 1.7e-56 223.0 199 57.8
ClCG10G007720 Citrullus lanatus HOM05D004350 ORTHO05D005260 1.7e-56 223.0 186 61.3
arahy.Tifrunner.gnm1.ann1.4PU0PP Arachis hypogaea HOM05D004350 ORTHO05D005260 3.8e-56 221.9 196 59.7
arahy.Tifrunner.gnm1.ann1.Y3UPDN Arachis hypogaea HOM05D004350 ORTHO05D005260 3.8e-56 221.9 196 59.7
GSVIVG01005931001 Vitis vinifera HOM05D004350 ORTHO05D005260 5.0e-56 221.5 196 59.2
CDE04G1055 Ceratophyllum demersum HOM05D004350 ORTHO05D005260 8.5e-56 220.7 199 57.8
Solyc04g014370.4 Solanum lycopersicum HOM05D004350 ORTHO05D005260 8.5e-56 220.7 199 57.3
Phvul.003G289100 Phaseolus vulgaris HOM05D004350 ORTHO05D005260 1.1e-55 220.3 199 57.3
Thecc.01G091200 Theobroma cacao HOM05D004350 ORTHO05D005260 2.5e-55 219.2 199 57.3
CDE06G0701 Ceratophyllum demersum HOM05D004350 ORTHO05D005260 4.2e-55 218.4 199 56.8
FAN19G0871 Fragaria x ananassa HOM05D004350 ORTHO05D005260 4.2e-55 218.4 181 57.5
Sopen04g006490 Solanum pennellii HOM05D004350 ORTHO05D005260 4.2e-55 218.4 199 56.3
Os04g0271200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 5.5e-55 218.0 199 57.3
FAN26G2403 Fragaria x ananassa HOM05D004350 ORTHO05D005260 7.2e-55 217.6 181 57.5
Rhsim08G0016400 Rhododendron simsii HOM05D004350 ORTHO05D005260 7.2e-55 217.6 231 51.5
Sp6g32950 Schrenkiella parvula HOM05D004350 ORTHO05D005260 7.2e-55 217.6 199 57.3
Aa31LG3G16680 Aethionema arabicum HOM05D004350 ORTHO05D005260 9.4e-55 217.2 197 57.9
Thhalv10014620m.g Eutrema salsugineum HOM05D004350 ORTHO05D005260 9.4e-55 217.2 199 57.3
FAN23G0465 Fragaria x ananassa HOM05D004350 ORTHO05D005260 1.2e-54 216.9 181 56.9
Glyma.18G146900 Glycine max HOM05D004350 ORTHO05D005260 1.2e-54 216.9 199 55.8
PGSC0003DMG400023576 Solanum tuberosum HOM05D004350 ORTHO05D005260 1.2e-54 216.9 199 56.3
VMungo1215G0627 Vigna mungo HOM05D004350 ORTHO05D005260 2.7e-54 215.7 217 53.0
Glyma.08G279700 Glycine max HOM05D004350 ORTHO05D005260 3.6e-54 215.3 199 56.3
CAN.G525.29 Capsicum annuum HOM05D004350 ORTHO05D005260 4.7e-54 214.9 199 55.8
Phvul.002G147400 Phaseolus vulgaris HOM05D004350 ORTHO05D005260 4.7e-54 214.9 199 56.3
QL06p035732 Quercus lobata HOM05D004350 ORTHO05D005260 4.7e-54 214.9 249 47.4
VMungo0251G2520 Vigna mungo HOM05D004350 ORTHO05D005260 4.7e-54 214.9 199 56.3
Carub.0006s0896 Capsella rubella HOM05D004350 ORTHO05D005260 6.1e-54 214.5 199 56.8
Zm00001eb124340 Zea mays HOM05D004350 ORTHO05D005260 6.1e-54 214.5 199 55.8
AL6G21000 Arabidopsis lyrata HOM05D004350 ORTHO05D005260 8.0e-54 214.2 199 56.8
BcaB08g37102 Brassica carinata HOM05D004350 ORTHO05D005260 8.0e-54 214.2 199 56.3
TWI53G1737 Tripterygium wilfordii HOM05D004350 ORTHO05D005260 8.0e-54 214.2 199 57.3
Hund16535 Selenicereus undatus HOM05D004350 ORTHO05D005260 1.0e-53 213.8 199 56.3
AT5G10480 Arabidopsis thaliana HOM05D004350 ORTHO05D005260 1.4e-53 213.4 199 56.8
Nitab4.5_0009469g0010 Nicotiana tabacum HOM05D004350 ORTHO05D005260 1.4e-53 213.4 194 56.7
TPR.G14596 Trifolium pratense HOM05D004350 ORTHO05D005260 1.4e-53 213.4 199 54.8
C09p66790 Brassica napus HOM05D004350 ORTHO05D005260 1.8e-53 213.0 200 56.0
A10p27090 Brassica napus HOM05D004350 ORTHO05D005260 2.3e-53 212.6 200 56.0
AUR62003659 Chenopodium quinoa HOM05D004350 ORTHO05D005260 2.3e-53 212.6 199 56.3
FvH4_1g19690 Fragaria vesca HOM05D004350 ORTHO05D005260 5.2e-53 211.5 199 52.3
Nitab4.5_0000902g0360 Nicotiana tabacum HOM05D004350 ORTHO05D005260 6.7e-53 211.1 184 57.6
A03p04570 Brassica napus HOM05D004350 ORTHO05D005260 8.8e-53 210.7 199 56.3
BcaB01g06282 Brassica carinata HOM05D004350 ORTHO05D005260 1.2e-52 210.3 199 55.8
BraA10t44761Z Brassica rapa HOM05D004350 ORTHO05D005260 1.2e-52 210.3 211 53.1
Os01g0150200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 1.2e-52 210.3 199 54.8
BcaB01g05531 Brassica carinata HOM05D004350 ORTHO05D005260 2.0e-52 209.5 199 55.8
Ca_22608_v3 Cicer arietinum L. HOM05D004350 ORTHO05D005260 4.4e-52 208.4 199 55.8
BolC9t59459H Brassica oleracea HOM05D004350 ORTHO05D005260 5.7e-52 208.0 213 52.6
CsaV3_3G006860 Cucumis sativus L. HOM05D004350 ORTHO05D005260 7.5e-52 207.6 199 54.3
RcHm_v2.0_Chr2g0111251 Rosa chinensis HOM05D004350 ORTHO05D005260 7.5e-52 207.6 200 54.5
EL10Ac6g15209 Beta vulgaris HOM05D004350 ORTHO05D005260 9.7e-52 207.2 199 53.8
TWI74G1117 Tripterygium wilfordii HOM05D004350 ORTHO05D005260 9.7e-52 207.2 195 55.9
Oeu003728.1 Olea europaea HOM05D004350 ORTHO05D005260 1.7e-51 206.5 199 52.8
DCAR_014186 Daucus carota HOM05D004350 ORTHO05D005260 6.3e-51 204.5 172 59.9
C03p05130 Brassica napus HOM05D004350 ORTHO05D005260 8.3e-51 204.1 209 54.1
CARHR202810 Cardamine hirsuta HOM05D004350 ORTHO05D005260 8.3e-51 204.1 194 54.6
Aa31LG5G22920 Aethionema arabicum HOM05D004350 ORTHO05D005260 1.1e-50 203.8 200 53.0
Cc07_g14130 Coffea canephora HOM05D004350 ORTHO05D005260 1.1e-50 203.8 194 55.7
FAN28G1749 Fragaria x ananassa HOM05D004350 ORTHO05D005260 1.4e-50 203.4 189 54.5
ECA238G4457 Erigeron canadensis HOM05D004350 ORTHO05D005260 3.1e-50 202.2 200 52.5
Sed0019313 Sechium edule HOM05D004350 ORTHO05D005260 3.1e-50 202.2 199 54.3
MELO3C016419.2 Cucumis melo HOM05D004350 ORTHO05D005260 2.0e-49 199.5 223 50.2
Oeu055598.1 Olea europaea HOM05D004350 ORTHO05D005260 2.7e-49 199.1 199 51.8
Medtr8g471160 Medicago truncatula HOM05D004350 ORTHO05D005260 4.5e-49 198.4 199 50.8
HanXRQChr14g0442921 Helianthus annuus HOM05D004350 ORTHO05D005260 5.9e-49 198.0 200 51.5
Nitab4.5_0001468g0120 Nicotiana tabacum HOM05D004350 ORTHO05D005260 5.0e-48 194.9 231 48.1
Nitab4.5_0004153g0110 Nicotiana tabacum HOM05D004350 ORTHO05D005260 6.5e-48 194.5 160 61.2
Os01g0150500 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 1.5e-47 193.4 146 61.0
Peaxi162Scf00196g00225 Petunia axillaris HOM05D004350 ORTHO05D005260 1.5e-47 193.4 165 58.8
SalBow6G1994 Salvia bowleyana HOM05D004350 ORTHO05D005260 5.5e-47 191.4 200 50.5
SGA_v2.0_scaffold58G20514 Striga asiatica HOM05D004350 ORTHO05D005260 3.6e-46 188.7 199 50.8
PSO170G6456 Papaver somniferum HOM05D004350 ORTHO05D005260 2.3e-45 186.0 175 58.3
SGA_v2.0_scaffold32G13177 Striga asiatica HOM05D004350 ORTHO05D005260 6.8e-45 184.5 199 49.2
HanXRQChr11g0346981 Helianthus annuus HOM05D004350 ORTHO05D005260 8.8e-45 184.1 200 47.5
Psat4g119600 Pisum sativum HOM05D004350 ORTHO05D005260 4.4e-44 181.8 174 55.7
BolC3t13038H Brassica oleracea HOM05D004350 ORTHO05D005260 1.1e-42 177.2 182 53.8
Cpa.g.sc55.29 Carica papaya HOM05D004350 ORTHO05D005260 1.6e-41 173.3 166 57.2
Os01g0150800 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 2.7e-41 172.6 197 44.7
PSO170G2166 Papaver somniferum HOM05D004350 ORTHO05D005260 3.5e-41 172.2 170 55.3
Sopen11g005390 Solanum pennellii HOM05D004350 ORTHO05D005260 1.0e-40 170.6 164 54.9
Ca_22603_v3 Cicer arietinum L. HOM05D004350 ORTHO05D005260 6.8e-37 157.9 174 46.6
Pp3c2_13410 Physcomitrium patens HOM05D004350 ORTHO05D005260 7.5e-36 154.5 192 43.2
PGSC0003DMG400016135 Solanum tuberosum HOM05D004350 ORTHO05D005260 7.5e-36 154.5 151 55.0
AUR62017968 Chenopodium quinoa HOM05D004350 ORTHO05D005260 4.1e-34 148.7 148 54.1
Dinv13605 Davidia involucrata HOM05D004350 ORTHO05D005260 4.1e-34 148.7 88 79.5
SEGI_08262 Sequoiadendron giganteum HOM05D004350 ORTHO05D005260 9.2e-34 147.5 86 75.6
MD15G1313000 Malus domestica HOM05D004350 ORTHO05D005260 1.6e-33 146.7 77 85.7
BraA03t09799Z Brassica rapa HOM05D004350 ORTHO05D005260 3.5e-33 145.6 87 77.0
Migut.B00221 Erythranthe guttata HOM05D004350 ORTHO05D005260 4.5e-33 145.2 87 75.9
Lsat_1_v5_gn_2_70580 Lactuca sativa HOM05D004350 ORTHO05D005260 1.7e-32 143.3 89 70.8
SMO266G0038 Selaginella moellendorffii HOM05D004350 ORTHO05D005260 2.3e-32 142.9 193 39.9
Lju188A2T35 Lonicera japonica HOM05D004350 ORTHO05D005260 3.9e-32 142.1 87 73.6
ECA246G1176 Erigeron canadensis HOM05D004350 ORTHO05D005260 8.6e-32 141.0 172 46.5
Lsat_1_v5_gn_3_62861 Lactuca sativa HOM05D004350 ORTHO05D005260 3.6e-30 135.6 86 72.1
Os01g0150400 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 6.1e-30 134.8 143 48.3
Dinv36926 Davidia involucrata HOM05D004350 ORTHO05D005260 1.4e-29 133.7 140 53.6
AagrBONN_evm.TU.Sc2ySwM_228.1037 Anthoceros agrestis HOM05D004350 ORTHO05D005260 1.8e-29 133.3 87 67.8
Mapoly0034s0103 Marchantia polymorpha HOM05D004350 ORTHO05D005260 7.5e-28 127.9 87 64.4
Lalb_Chr16g0381651 Lupinus albus HOM05D004350 ORTHO05D005260 1.1e-26 124.0 63 87.3
Zm00001eb335910 Zea mays HOM05D004350 ORTHO05D005260 1.7e-24 116.7 194 35.6
AUR62043746 Chenopodium quinoa HOM05D004350 ORTHO05D005260 4.7e-22 108.6 56 85.7
CAN.G1344.6 Capsicum annuum HOM05D004350 ORTHO05D005260 5.2e-21 105.1 149 45.6
FAN19G1284 Fragaria x ananassa HOM05D004350 ORTHO05D005260 3.7e-19 99.0 63 69.8
Sabra07G0008400 Salix brachista HOM05D004350 ORTHO05D005260 1.9e-18 96.7 50 86.0
MD15G1312800 Malus domestica HOM05D004350 ORTHO05D005260 4.1e-18 95.5 63 71.4
Solyc11g010590.3 Solanum lycopersicum HOM05D004350 ORTHO05D005260 9.2e-18 94.4 129 45.0
COL.COLO4_27351 Corchorus olitorius HOM05D004350 ORTHO05D005260 1.2e-17 94.0 121 45.5
MD04G1039300 Malus domestica HOM05D004350 ORTHO05D005260 5.1e-16 88.6 63 65.1
Cre03.g167924 Chlamydomonas reinhardtii HOM05D004350 ORTHO05D005260 1.5e-15 87.0 89 44.9
Lsat_1_v5_gn_3_62901 Lactuca sativa HOM05D004350 ORTHO05D005260 3.3e-15 85.9 62 61.3
PRCOL_00006117 Prasinoderma coloniale HOM05D004350 ORTHO05D005260 4.3e-15 85.5 92 46.7
MCO05G519 Micromonas commoda HOM05D004350 ORTHO05D008939 3.4e-12 75.9 84 42.9
unitig_0.g838 Utricularia gibba HOM05D004350 ORTHO05D005260 5.8e-12 75.1 58 60.3
MCO16G529 Micromonas commoda HOM05D004350 ORTHO05D005260 2.9e-11 72.8 209 25.8
Os08g0393600 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 4.9e-11 72.0 63 54.0
PRCOL_00000565 Prasinoderma coloniale HOM05D004350 ORTHO05D008939 1.1e-10 70.9 125 29.6
VMungo1383G3518 Vigna mungo HOM05D023956 ORTHO05D013007 4.1e-10 68.9 56 55.4
Cre08.g363500 Chlamydomonas reinhardtii HOM05D004350 ORTHO05D008939 1.2e-09 67.4 85 36.5
Mapoly0010s0013 Marchantia polymorpha HOM05D007195 ORTHO05D008939 8.6e-08 61.2 95 37.9
Oeu040291.1 Olea europaea HOM05D007195 ORTHO05D008939 9.5e-07 57.8 78 39.7
AL8G36290 Arabidopsis lyrata HOM05D007195 ORTHO05D008939 2.1e-06 56.6 78 37.2
Migut.D02132 Erythranthe guttata HOM05D007195 ORTHO05D008939 2.1e-06 56.6 78 37.2
Cpa.g.sc190.38 Carica papaya HOM05D007195 ORTHO05D008939 2.8e-06 56.2 57 43.9
A02p06880 Brassica napus HOM05D007195 ORTHO05D008939 4.7e-06 55.5 79 35.4
Carub.0008s2043 Capsella rubella HOM05D007195 ORTHO05D008939 4.7e-06 55.5 78 35.9
CDE11G0069 Ceratophyllum demersum HOM05D007195 ORTHO05D008939 4.7e-06 55.5 81 38.3
Thhalv10014612m.g Eutrema salsugineum HOM05D007195 ORTHO05D008939 4.7e-06 55.5 77 37.7
Peaxi162Scf00411g00012 Petunia axillaris HOM05D007195 ORTHO05D008939 4.7e-06 55.5 140 32.1
Sc12g0001700 Simmondsia chinensis HOM05D007195 ORTHO05D008939 4.7e-06 55.5 52 48.1
unitig_899.g14897 Utricularia gibba HOM05D007195 ORTHO05D008939 4.7e-06 55.5 79 40.5
Actinidia37244 Actinidia chinensis HOM05D007195 ORTHO05D008939 6.2e-06 55.1 59 40.7
AagrBONN_evm.TU.Sc2ySwM_344.4841 Anthoceros agrestis HOM05D007195 ORTHO05D008939 6.2e-06 55.1 99 32.3
AT5G59770 Arabidopsis thaliana HOM05D007195 ORTHO05D008939 6.2e-06 55.1 78 37.2
Gohir.D03G129800 Gossypium hirsutum HOM05D007195 ORTHO05D008939 6.2e-06 55.1 79 39.2
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 6.2e-06 55.1 89 39.3
Atru.chr3.3816 Acer truncatum HOM05D007195 ORTHO05D008939 8.1e-06 54.7 58 43.1
Gohir.A03G038600 Gossypium hirsutum HOM05D007195 ORTHO05D008939 8.1e-06 54.7 61 44.3
HanXRQChr06g0175991 Helianthus annuus HOM05D007195 ORTHO05D008939 8.1e-06 54.7 101 33.7
Hma1.2p1_0846F.1_g227620 Hydrangea macrophylla HOM05D007195 ORTHO05D008939 8.1e-06 54.7 59 39.0
PSO339G1320 Papaver somniferum HOM05D007195 ORTHO05D008939 8.1e-06 54.7 81 35.8


User provided reference genes

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