Gene: AT5G10480

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G10480
  • Transcript Identifier AT5G10480.1
  • Gene Type Coding gene
  • Location Chr5 : 3298047-3300048 : negative

Gene Family Information

  • ID HOM05D004350
  • #Genes/#Species 164/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G10480.1
  • symbol PAS2
  • Alias PEP,PEPINO
  • full_name PASTICCINO 2
  • uniprot Q8VZB2

Descriptions

  • Description Protein-tyrosine phosphatase-like, PTPLA
  • Computational description PASTICCINO 2 (PAS2); CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA (TAIR:AT5G59770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030154
IMP
Gene Ontologycell differentiation1
GO:0042761
IMP
IBA
Gene Ontologyvery long-chain fatty acid biosynthetic process2 3
GO:0030148
IBA
Gene Ontologysphingolipid biosynthetic process3
GO:0030497
IBA
Gene Ontologyfatty acid elongation3
GO:0006633
IEA
GOA Databasefatty acid biosynthetic process
GO:0006629
IEA
GOA Databaselipid metabolic process
GO:0006631
IEA
GOA Databasefatty acid metabolic process
GO:0051302
IMP
Gene Ontologyregulation of cell division4
GO:0050732
IMP
Gene Ontologynegative regulation of peptidyl-tyrosine phosphorylation4
GO:0048640
IMP
Gene Ontologynegative regulation of developmental growth4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0018812
IBA
Gene Ontology3-hydroxyacyl-CoA dehydratase activity3
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0016829
IEA
GOA Databaselyase activity
GO:0080023
IGI
Gene Ontology3R-hydroxyacyl-CoA dehydratase activity2
GO:0004725
ISS
Gene Ontologyprotein tyrosine phosphatase activity6
GO:0102345
IEA
Gene Ontology3-hydroxy-lignoceroyl-CoA dehydratase activity
GO:0102344
IEA
Gene Ontology3-hydroxy-behenoyl-CoA dehydratase activity
GO:0102343
IEA
Gene Ontology3-hydroxy-arachidoyl-CoA dehydratase activity
GO:0102158
IEA
Gene Ontologyvery-long-chain 3-hydroxyacyl-CoA dehydratase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus4
GO:0030176
IBA
Gene Ontologyintegral component of endoplasmic reticulum membrane3
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005789
IEA
GOA Databaseendoplasmic reticulum membrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016021
IDA
Gene Ontologyintegral component of membrane7
GO:0016020
IEA
GOA Databasemembrane
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0005783
HDA
Gene Ontologyendoplasmic reticulum8
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0009923
IPI
Gene Ontologyfatty acid elongase complex2
GO:0005829
IDA
Gene Ontologycytosol4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007482 Protein-tyrosine phosphatase-like, PTPLA
Mapman id Description
5.1.6.1.2 Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.3-hydroxyacyl-CoA dehydratase (HCD)