Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 4.5e-186 654.4 330 100.0
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.4e-158 563.1 378 79.1
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.8e-158 562.8 378 79.1
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.1e-134 483.8 380 69.7
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.6e-133 479.2 382 69.1
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 1.1e-118 430.6 383 61.6
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 1.4e-118 430.3 382 61.5
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 1.8e-118 429.9 380 60.5
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 5.8e-117 424.9 379 60.2
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 9.9e-117 424.1 380 60.0
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 2.4e-115 419.5 382 59.2
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 5.1e-113 411.8 380 58.7
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 1.5e-112 410.2 383 58.7
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 2.5e-112 409.5 380 60.0
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 3.3e-112 409.1 380 58.2
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 4.0e-110 402.1 381 58.3
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 6.9e-110 401.4 370 59.5
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 9.0e-110 401.0 379 58.8
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 1.2e-109 400.6 389 58.4
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 3.4e-109 399.1 384 57.6
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 3.8e-108 395.6 382 57.3
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 4.9e-108 395.2 375 58.4
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 4.9e-108 395.2 375 58.4
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 3.2e-107 392.5 382 56.0
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 3.2e-107 392.5 386 56.2
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 4.6e-106 388.7 383 56.7
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 6.0e-106 388.3 386 56.5
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 7.9e-106 387.9 380 57.1
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 7.9e-106 387.9 385 57.1
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 1.0e-105 387.5 379 56.2
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 3.0e-105 386.0 380 56.8
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 3.0e-105 386.0 385 56.6
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 5.1e-105 385.2 381 56.2
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 6.7e-105 384.8 381 56.2
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 1.5e-104 383.6 380 56.6
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 1.9e-104 383.3 380 56.3
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 7.4e-104 381.3 383 55.4
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 1.3e-103 380.6 383 55.1
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 2.1e-103 379.8 380 55.5
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 6.2e-103 378.3 381 55.6
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 8.1e-103 377.9 381 56.2
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 1.4e-102 377.1 385 55.6
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 6.9e-102 374.8 384 54.4
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 5.8e-101 371.7 385 55.1
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 1.0e-100 370.9 385 52.2
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 1.0e-100 370.9 381 54.9
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 1.0e-100 370.9 389 55.0
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 1.7e-100 370.2 377 55.7
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.9e-100 369.4 386 53.9
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 2.9e-100 369.4 386 54.7
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 2.9e-100 369.4 381 55.6
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 6.5e-100 368.2 383 54.3
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 4.2e-99 365.5 387 51.7
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 7.1e-99 364.8 383 53.0
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 1.6e-98 363.6 381 55.1
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.7e-98 362.8 391 51.7
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 4.6e-98 362.1 383 50.4
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 6.0e-98 361.7 382 53.4
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 7.9e-98 361.3 380 54.5
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 7.9e-98 361.3 387 51.9
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 1.0e-97 360.9 384 53.1
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 1.3e-97 360.5 384 53.4
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 2.3e-97 359.8 387 51.7
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 3.9e-97 359.0 384 51.6
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 6.7e-97 358.2 412 50.5
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 8.7e-97 357.8 378 53.7
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 1.9e-96 356.7 383 52.0
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.5e-96 356.3 381 52.8
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 3.3e-96 355.9 384 51.8
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 3.3e-96 355.9 381 53.0
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 4.3e-96 355.5 417 47.7
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 4.3e-96 355.5 383 50.4
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 7.4e-96 354.8 385 51.4
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 7.4e-96 354.8 382 53.1
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.6e-95 353.6 379 52.2
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 2.8e-95 352.8 343 55.7
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 4.8e-95 352.1 390 51.0
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 7.6e-93 344.7 384 52.9
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.3e-92 344.0 384 52.6
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 6.5e-92 341.7 372 53.0
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 8.4e-92 341.3 381 53.3
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.4e-91 340.5 381 50.7
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 5.5e-91 338.6 378 52.4
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 9.3e-91 337.8 344 53.5
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 3.5e-90 335.9 378 51.9
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 1.3e-89 334.0 384 50.3
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 6.7e-89 331.6 416 48.6
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 8.7e-89 331.3 349 52.7
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 2.5e-88 329.7 379 49.3
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 4.3e-88 328.9 378 49.7
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 1.6e-87 327.0 380 50.0
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 1.6e-87 327.0 374 50.8
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 3.7e-87 325.9 384 49.5
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 5.3e-86 322.0 381 50.1
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 2.0e-85 320.1 382 51.0
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 1.7e-84 317.0 382 51.0
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 5.0e-84 315.5 383 48.6
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 1.9e-83 313.5 388 48.2
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 3.2e-83 312.8 379 49.3
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 4.6e-82 308.9 384 48.7
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 7.9e-82 308.1 384 48.2
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 1.0e-81 307.8 384 47.4
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 1.4e-81 307.4 382 48.7
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 1.8e-81 307.0 379 47.2
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 1.5e-80 303.9 376 47.3
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 2.0e-80 303.5 383 47.5
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 3.3e-80 302.8 376 47.1
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 3.3e-80 302.8 381 47.8
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 5.7e-80 302.0 381 47.5
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 9.7e-80 301.2 384 47.7
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 1.7e-79 300.4 387 47.5
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 1.7e-79 300.4 387 47.5
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 1.7e-79 300.4 388 47.4
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 2.2e-79 300.1 383 47.3
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 2.4e-78 296.6 389 46.8
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 2.4e-78 296.6 383 46.2
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 2.0e-77 293.5 296 55.7
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 5.9e-77 292.0 386 45.6
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 2.9e-76 289.7 385 45.7
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 5.0e-76 288.9 383 46.7
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 8.5e-76 288.1 378 46.3
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 5.5e-75 285.4 378 45.8
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 5.5e-75 285.4 384 46.4
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 3.0e-73 279.6 367 48.2
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 3.9e-73 279.3 385 44.7
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 6.7e-73 278.5 323 49.5
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 2.0e-72 276.9 378 44.7
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 4.4e-72 275.8 382 45.3
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 6.3e-71 271.9 387 43.7
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 2.4e-70 270.0 380 45.3
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 1.5e-69 267.3 352 46.9
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 1.3e-68 264.2 381 43.3
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 2.9e-68 263.1 386 43.3
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 2.9e-68 263.1 386 43.3
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 7.2e-67 258.5 384 43.0
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 8.0e-66 255.0 409 42.3
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 5.2e-65 252.3 382 42.4
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 5.2e-65 252.3 193 65.8
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 9.7e-64 248.1 378 42.3
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 7.0e-62 241.9 329 43.8
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 9.1e-62 241.5 321 44.9
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 1.6e-61 240.7 331 43.8
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 2.6e-61 240.0 335 43.3
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 4.5e-61 239.2 382 41.1
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 4.2e-59 232.6 198 59.6
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 1.2e-53 214.5 321 38.6
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.0e-52 211.5 327 38.5
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 2.3e-49 200.3 411 37.0
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 2.6e-48 196.8 387 36.2
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 3.7e-47 193.0 378 38.9
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 1.2e-42 177.9 384 34.1
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 3.2e-38 163.3 392 33.2
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 9.5e-35 151.8 192 47.4
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 4.7e-34 149.4 301 35.9
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 6.8e-33 145.6 147 57.8
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 4.9e-31 139.4 440 30.0
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 6.4e-31 139.0 287 33.8
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 2.7e-29 133.7 194 44.3
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 3.0e-28 130.2 347 34.0
Actinidia14145 Actinidia chinensis HOM05D003678 ORTHO05D004340 1.2e-26 124.8 125 55.2
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 3.4e-24 116.7 231 34.6
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 1.1e-19 101.7 289 30.1
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 1.5e-19 101.3 141 46.8
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 1.4e-17 94.7 106 50.0
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 1.4e-17 94.7 106 50.0
ECA246G0440 Erigeron canadensis HOM05D003678 ORTHO05D004340 2.3e-17 94.0 63 63.5
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 3.1e-17 93.6 106 49.1
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 2.6e-16 90.5 149 38.3
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 4.4e-16 89.7 98 51.0
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 9.9e-16 88.6 96 51.0
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 2.9e-15 87.0 131 40.5
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 8.4e-15 85.5 131 39.7
ECA246G4346 Erigeron canadensis HOM05D000087 ORTHO05D009473 1.4e-09 68.2 95 50.5
Cre17.g716400 Chlamydomonas reinhardtii HOM05D003678 ORTHO05D004340 4.0e-09 66.6 287 27.2
Os06g0693600 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 9.9e-08 62.0 112 42.9
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 1.3e-07 61.6 49 61.2
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 3.8e-07 60.1 66 51.5


User provided reference genes

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