Gene: Pp3c2_4670

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c2_4670
  • Transcript Identifier Pp3c2_4670V3.2
  • Gene Type Coding gene
  • Location Chr02 : 3067202-3068682 : negative

Gene Family Information

  • ID HOM05D003678
  • #Genes/#Species 187/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c2_4670V3.2
  • pacid 32937269
  • alias Pp1s7_252V6
  • alias Phpat.002G020800
  • alias Phypa_113536
  • uniprot A0A2K1L070

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042273
IBA
GOA Databaseribosomal large subunit biogenesis
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G24500
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT2G24500
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT2G24500
GO:0090070
ISO
PLAZA Integrative Orthologypositive regulation of ribosome biogenesis AT2G24500

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G24500
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT2G24500

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0030687
IBA
GOA Databasepreribosome, large subunit precursor
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G24500
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G24500

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036236 Zinc finger C2H2 superfamily
IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
IPR040025 Zinc finger protein 622/Rei1/Reh1
IPR013087 Zinc finger C2H2-type
IPR041661 ZN622/Rei1/Reh1, zinc finger C2H2-type
Mapman id Description
17.1.2.2.3.2 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.maturation factor (REIL)