Gene: Sopen12g032280

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g032280
  • Transcript Identifier Sopen12g032280.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 81245327-81251276 : positive

Gene Family Information

  • ID HOM05D003678
  • #Genes/#Species 187/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g032280.1

Descriptions

  • Description Zinc finger protein 622 | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription | LOCATED IN: intracellular | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like , Zinc finger, C2H2-type | BEST Arabidopsis thaliana protein match is: Zinc finger protein 622
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006486
IEA
InterProprotein glycosylation
GO:0042273
ISO
PLAZA Integrative Orthologyribosomal large subunit biogenesis AT2G24500
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G24500
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT2G24500
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT2G24500
GO:0090070
ISO
PLAZA Integrative Orthologypositive regulation of ribosome biogenesis AT2G24500

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016758
IEA
InterProhexosyltransferase activity
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G24500
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT2G24500

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
InterPromembrane
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G24500
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G24500
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G24500

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013087 Zinc finger C2H2-type
IPR041661 ZN622/Rei1/Reh1, zinc finger C2H2-type
IPR036236 Zinc finger C2H2 superfamily
IPR022755 Zinc finger, double-stranded RNA binding
IPR002659 Glycosyl transferase, family 31
IPR040025 Zinc finger protein 622/Rei1/Reh1
IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
Mapman id Description
17.1.2.2.3.2 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.maturation factor (REIL)
21.2.5.1.1 Cell wall organisation.hemicellulose.arabinogalactan.biosynthesis.beta-1,3-galactosyltransferase