Gene: AT4G31420

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G31420
  • Transcript Identifier AT4G31420.2
  • Gene Type Coding gene
  • Location Chr4 : 15245987-15247763 : negative

Gene Family Information

  • ID HOM05D003678
  • #Genes/#Species 187/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G31420.2
  • Alias REIL1,REI1-LIKE 1
  • uniprot Q8H1G5

Descriptions

  • Description Zinc finger protein 622
  • Computational description Zinc finger protein 622; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Zinc finger protein 622 (TAIR:AT2G24500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Computational description Zinc finger protein 622; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Zinc finger protein 622 (TAIR:AT2G24500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042273
IBA
GOA Databaseribosomal large subunit biogenesis
GO:0042273
IDA
Gene Ontologyribosomal large subunit biogenesis1
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0090070
IGI
Gene Ontologypositive regulation of ribosome biogenesis2
GO:0009631
IGI
Gene Ontologycold acclimation2
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding4
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
Gene Ontologycytosol2
GO:0030687
IBA
GOA Databasepreribosome, large subunit precursor
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005886
HDA
Gene Ontologyplasma membrane5
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036236 Zinc finger C2H2 superfamily
IPR040025 Zinc finger protein 622/Rei1/Reh1
IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
IPR041661 ZN622/Rei1/Reh1, zinc finger C2H2-type
IPR013087 Zinc finger C2H2-type
Mapman id Description
17.1.2.2.3.2 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.maturation factor (REIL)