Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.3e-200 701.4 340 100.0
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.4e-142 510.0 256 96.5
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.8e-73 280.4 267 58.4
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 5.5e-70 268.9 277 55.6
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 1.4e-68 264.2 268 53.0
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.8e-68 263.8 270 54.4
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 3.0e-68 263.1 267 54.7
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 3.0e-68 263.1 270 54.8
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 5.1e-68 262.3 250 56.0
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.1e-68 262.3 264 54.2
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 6.7e-68 261.9 270 54.4
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 1.1e-67 261.2 266 53.8
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 1.1e-67 261.2 270 54.4
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 1.5e-67 260.8 264 54.2
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 2.0e-67 260.4 272 54.0
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 2.5e-67 260.0 278 53.2
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 4.3e-67 259.2 275 54.2
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 4.3e-67 259.2 252 54.8
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 5.7e-67 258.8 256 55.1
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 9.7e-67 258.1 275 52.0
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 1.3e-66 257.7 275 52.4
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 1.7e-66 257.3 273 53.1
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 2.2e-66 256.9 265 51.7
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 2.8e-66 256.5 271 53.9
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 3.7e-66 256.1 270 53.3
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 3.7e-66 256.1 270 53.7
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 3.7e-66 256.1 241 55.6
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 4.8e-66 255.8 264 52.7
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 4.8e-66 255.8 272 52.2
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 6.3e-66 255.4 253 53.4
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 8.2e-66 255.0 274 52.9
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 1.8e-65 253.8 272 52.9
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 1.8e-65 253.8 274 51.8
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 1.8e-65 253.8 209 61.7
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 2.4e-65 253.4 281 51.6
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 3.1e-65 253.1 280 53.2
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 4.1e-65 252.7 209 60.3
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 4.1e-65 252.7 277 51.3
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 5.3e-65 252.3 276 52.2
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 5.3e-65 252.3 273 51.3
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 6.9e-65 251.9 256 53.9
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 6.9e-65 251.9 276 52.5
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 6.9e-65 251.9 209 60.8
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 6.9e-65 251.9 278 52.5
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 6.9e-65 251.9 209 60.3
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 6.9e-65 251.9 274 51.5
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 9.1e-65 251.5 253 53.0
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 1.5e-64 250.8 274 52.9
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 1.5e-64 250.8 267 50.9
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 2.0e-64 250.4 269 51.7
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.0e-64 250.4 276 51.8
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 3.4e-64 249.6 209 59.8
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 3.4e-64 249.6 209 59.8
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 4.5e-64 249.2 272 51.8
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 5.9e-64 248.8 212 57.5
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 5.9e-64 248.8 276 51.4
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 5.9e-64 248.8 281 50.9
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 5.9e-64 248.8 209 58.4
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 5.9e-64 248.8 209 59.3
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 5.9e-64 248.8 221 58.8
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 7.7e-64 248.4 257 51.0
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 7.7e-64 248.4 211 57.8
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 7.7e-64 248.4 209 59.8
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 7.7e-64 248.4 272 51.5
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.0e-63 248.1 208 58.7
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 1.0e-63 248.1 212 57.1
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.0e-63 248.1 274 52.6
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 1.0e-63 248.1 269 52.4
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 1.3e-63 247.7 274 52.6
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.3e-63 247.7 274 52.6
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 1.7e-63 247.3 268 51.5
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 2.2e-63 246.9 261 50.6
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 2.2e-63 246.9 209 58.4
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 2.2e-63 246.9 274 51.1
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 2.9e-63 246.5 211 57.8
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 2.9e-63 246.5 233 54.1
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 2.9e-63 246.5 211 57.8
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 2.9e-63 246.5 317 46.7
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 2.9e-63 246.5 209 58.4
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 2.9e-63 246.5 211 59.2
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 2.9e-63 246.5 209 57.4
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 3.8e-63 246.1 209 57.9
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 3.8e-63 246.1 209 57.9
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 3.8e-63 246.1 312 47.8
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 5.0e-63 245.7 275 49.5
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 5.0e-63 245.7 211 57.8
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 5.0e-63 245.7 241 53.9
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 6.5e-63 245.4 209 57.9
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 6.5e-63 245.4 274 52.2
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 6.5e-63 245.4 272 50.7
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 8.5e-63 245.0 209 57.9
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 8.5e-63 245.0 209 57.9
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 1.1e-62 244.6 239 53.6
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.1e-62 244.6 209 58.9
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 1.4e-62 244.2 209 59.3
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.4e-62 244.2 279 51.6
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 1.9e-62 243.8 211 58.3
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 3.2e-62 243.0 209 56.9
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 3.2e-62 243.0 237 53.6
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 3.2e-62 243.0 210 58.1
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 4.2e-62 242.7 209 56.5
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 4.2e-62 242.7 209 58.4
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 2.1e-61 240.4 222 55.9
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 2.1e-61 240.4 210 59.0
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 3.6e-61 239.6 208 57.2
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 3.6e-61 239.6 211 56.9
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.7e-61 239.2 284 50.7
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 6.1e-61 238.8 209 57.4
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 6.1e-61 238.8 314 45.9
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 7.9e-61 238.4 239 54.0
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 1.0e-60 238.0 275 48.7
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 1.0e-60 238.0 232 53.0
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 1.8e-60 237.3 275 49.8
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 2.3e-60 236.9 280 50.4
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 1.1e-59 234.6 218 55.0
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 2.0e-59 233.8 278 49.3
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 4.4e-59 232.6 309 45.0
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 9.7e-59 231.5 272 50.0
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 6.3e-58 228.8 209 54.5
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 4.1e-57 226.1 212 55.2
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 4.1e-57 226.1 257 50.6
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 4.1e-57 226.1 197 57.9
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 2.6e-56 223.4 216 52.8
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 1.5e-54 217.6 209 51.2
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 2.5e-54 216.9 209 53.1
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 9.4e-54 214.9 184 60.3
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.2e-53 214.5 184 60.9
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 4.7e-53 212.6 184 60.3
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 3.7e-50 203.0 251 45.4
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 6.3e-50 202.2 184 57.1
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.4e-49 201.1 184 57.6
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 5.9e-48 195.7 269 45.0
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 7.7e-48 195.3 229 50.7
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.2e-46 189.9 254 47.2
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 3.2e-46 189.9 214 47.7
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 4.2e-46 189.5 158 58.2
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 1.2e-45 188.0 255 44.3
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 2.7e-45 186.8 210 51.9
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 6.1e-45 185.7 209 49.8
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 6.1e-45 185.7 209 49.8
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 8.8e-44 181.8 214 49.5
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.5e-43 181.0 96 91.7
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 1.4e-41 174.5 288 41.0
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 5.4e-41 172.6 193 48.2
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.4e-41 172.6 104 83.7
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 7.0e-41 172.2 204 46.6
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 2.9e-39 166.8 243 40.3
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 6.5e-39 165.6 208 45.7
Cc00_g28580 Coffea canephora HOM05D003708 ORTHO05D004452 3.4e-35 153.3 158 52.5
TPR.G8954 Trifolium pratense HOM05D003708 ORTHO05D004452 4.5e-32 142.9 99 64.6
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 1.1e-30 138.3 179 45.8
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 2.7e-24 117.1 167 41.9
SEGI_18999 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 8.6e-23 112.1 162 38.3
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 4.3e-22 109.8 110 53.6
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 7.3e-22 109.0 109 53.2
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 7.3e-22 109.0 113 53.1
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.0e-20 103.2 110 51.8
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.0e-20 103.2 110 51.8
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 4.6e-16 89.7 100 50.0
BcaC04g19188 Brassica carinata HOM05D003708 ORTHO05D004452 1.6e-13 81.3 50 68.0
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 1.4e-12 78.2 79 53.2
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 1.2e-11 75.1 103 40.8
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 6.0e-08 62.8 31 87.1
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 7.8e-08 62.4 31 87.1
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 4.3e-06 56.6 75 45.3
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 5.6e-06 56.2 30 76.7


User provided reference genes

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