Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 2.3e-207 725.3 358 100.0
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 1.5e-155 553.1 366 74.9
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 1.3e-154 550.1 368 76.1
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 2.9e-146 522.3 384 70.3
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 1.1e-145 520.4 346 76.3
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 1.4e-145 520.0 330 77.9
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 7.1e-145 517.7 377 70.3
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 1.6e-144 516.5 370 70.8
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 4.6e-144 515.0 368 72.0
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 1.3e-143 513.5 374 70.9
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 1.5e-142 510.0 362 73.2
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.9e-142 509.6 367 72.2
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 3.3e-142 508.8 354 72.9
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 4.3e-142 508.4 363 72.5
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 7.4e-142 507.7 354 72.3
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 7.4e-142 507.7 363 72.7
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 9.7e-142 507.3 356 71.9
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.6e-141 506.5 354 72.3
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 1.6e-141 506.5 362 69.6
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 2.8e-141 505.8 358 71.2
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 1.4e-140 503.4 375 70.1
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 1.4e-140 503.4 371 70.1
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 1.8e-140 503.1 369 70.7
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 1.2e-139 500.4 364 70.3
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.2e-139 500.4 363 71.9
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 7.6e-139 497.7 360 71.7
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 1.0e-138 497.3 357 72.5
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 1.7e-138 496.5 366 69.1
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 1.7e-138 496.5 341 73.3
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 5.0e-138 495.0 373 69.2
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 6.5e-138 494.6 373 69.2
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 8.5e-138 494.2 340 72.1
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 1.4e-137 493.4 389 66.8
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 2.5e-137 492.7 372 67.5
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 3.2e-137 492.3 383 67.9
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 3.2e-137 492.3 360 68.9
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 5.5e-137 491.5 372 67.7
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 7.2e-137 491.1 359 69.1
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.2e-136 490.3 390 66.2
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 1.6e-136 490.0 357 69.5
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 4.6e-136 488.4 372 67.2
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 6.1e-136 488.0 371 68.2
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 1.3e-135 486.9 368 67.7
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 3.9e-135 485.3 365 69.3
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 8.7e-135 484.2 360 70.3
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 2.5e-134 482.6 345 70.7
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 3.3e-134 482.3 316 74.1
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 3.3e-134 482.3 364 68.1
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 4.3e-134 481.9 362 67.1
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 5.7e-134 481.5 365 67.4
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 7.4e-134 481.1 316 73.7
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 2.8e-133 479.2 407 63.1
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 3.7e-133 478.8 351 71.2
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 3.7e-133 478.8 363 68.3
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 1.4e-132 476.9 349 70.8
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 3.1e-132 475.7 333 70.0
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 4.1e-132 475.3 316 73.4
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 6.9e-132 474.6 330 70.0
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 6.9e-132 474.6 373 64.9
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 9.1e-132 474.2 331 73.4
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 1.2e-131 473.8 364 67.6
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 2.0e-131 473.0 392 64.0
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 3.4e-131 472.2 388 63.1
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 5.9e-131 471.5 356 68.3
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 5.9e-131 471.5 380 66.8
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 1.0e-130 470.7 413 61.3
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 1.3e-130 470.3 399 62.7
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 2.9e-130 469.2 362 69.6
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 3.8e-130 468.8 382 66.0
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 6.5e-130 468.0 352 66.8
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 1.1e-129 467.2 305 75.1
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 1.1e-129 467.2 347 71.5
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 1.9e-129 466.5 371 65.2
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 2.5e-129 466.1 353 66.9
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 3.2e-129 465.7 323 71.2
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 5.5e-129 464.9 351 67.2
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 7.2e-129 464.5 391 62.7
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 3.6e-128 462.2 363 65.6
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 4.7e-128 461.8 478 55.4
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 1.0e-127 460.7 349 67.0
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 3.0e-127 459.1 354 66.4
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 5.1e-127 458.4 314 74.5
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 6.7e-127 458.0 346 66.5
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 6.7e-127 458.0 346 66.5
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 8.8e-127 457.6 354 67.2
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 1.5e-126 456.8 332 68.1
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 3.3e-126 455.7 328 71.6
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 5.7e-126 454.9 383 62.7
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 4.5e-123 445.3 358 64.2
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 1.3e-122 443.7 374 61.2
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 2.9e-122 442.6 347 66.0
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 4.4e-118 428.7 420 57.1
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 8.5e-114 414.5 309 68.6
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 3.7e-109 399.1 306 68.3
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 2.0e-107 393.3 307 63.2
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 3.7e-101 372.5 340 60.6
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 3.1e-100 369.4 292 65.4
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 1.0e-95 354.4 300 58.3
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 1.8e-95 353.6 251 70.5
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 1.7e-93 347.1 358 53.1
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 4.9e-93 345.5 280 63.2
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 5.4e-92 342.0 253 68.0
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 2.6e-78 296.6 185 75.7
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 9.8e-78 294.7 452 40.0
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 1.4e-76 290.8 216 68.5
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 3.6e-72 276.2 193 74.1
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 2.8e-64 250.0 181 69.6
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 1.6e-59 234.2 162 74.1
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 1.2e-54 218.0 426 35.7
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 5.1e-50 202.6 225 52.4
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.8e-42 177.6 101 83.2
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 3.2e-36 156.8 136 61.0
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 1.6e-32 144.4 78 84.6
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 1.0e-21 108.6 310 27.7
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 1.4e-20 104.8 301 28.2
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 3.2e-20 103.6 312 27.9
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 4.3e-17 93.2 334 25.4
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 4.3e-17 93.2 320 27.2
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 1.7e-16 91.3 309 25.6
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 2.2e-16 90.9 304 26.3
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 8.2e-16 89.0 322 28.0
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.1e-15 88.6 319 27.3
C03p42560 Brassica napus HOM05D006708 ORTHO05D008321 5.3e-15 86.3 307 27.0
BraA03t12678Z Brassica rapa HOM05D006708 ORTHO05D008321 5.3e-15 86.3 307 27.0
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 6.9e-15 85.9 306 25.5
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 6.9e-15 85.9 330 26.4
AT3G06950 Arabidopsis thaliana HOM05D006708 ORTHO05D008321 9.1e-15 85.5 308 27.6
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 9.1e-15 85.5 304 25.7
AL3G18120 Arabidopsis lyrata HOM05D006708 ORTHO05D008321 1.2e-14 85.1 307 27.0
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.2e-14 85.1 304 25.7
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 1.2e-14 85.1 304 25.0
SGA_v2.0_scaffold109G31012 Striga asiatica HOM05D006708 ORTHO05D008321 1.2e-14 85.1 211 28.9
Thhalv10022298m.g Eutrema salsugineum HOM05D006708 ORTHO05D008321 1.5e-14 84.7 312 26.0
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.5e-14 84.7 304 25.7
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 2.0e-14 84.3 304 26.3
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 2.0e-14 84.3 304 25.7
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 2.6e-14 84.0 304 25.0
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 2.6e-14 84.0 302 27.2
Sp3g05900 Schrenkiella parvula HOM05D006708 ORTHO05D008321 3.4e-14 83.6 328 25.9
Carub.0003s0647 Capsella rubella HOM05D006708 ORTHO05D008321 4.5e-14 83.2 308 26.3
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 7.7e-14 82.4 338 26.0
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 7.7e-14 82.4 305 24.9
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 7.7e-14 82.4 305 25.9
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 1.0e-13 82.0 213 29.1
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 1.3e-13 81.6 316 26.9
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 1.3e-13 81.6 365 25.8
BolC3t16526H Brassica oleracea HOM05D006708 ORTHO05D008321 1.7e-13 81.3 364 25.3
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 1.7e-13 81.3 309 27.8
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 2.2e-13 80.9 198 28.3
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 2.2e-13 80.9 184 29.3
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 2.9e-13 80.5 317 25.9
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 3.8e-13 80.1 174 30.5
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 5.0e-13 79.7 304 26.3
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 5.0e-13 79.7 304 26.3
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 5.0e-13 79.7 174 31.0
Prupe.1G104700 Prunus persica HOM05D006708 ORTHO05D008321 5.0e-13 79.7 198 27.3
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 6.5e-13 79.3 312 26.0
Cpa.g.sc146.18 Carica papaya HOM05D006708 ORTHO05D008321 1.1e-12 78.6 308 25.3
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 1.1e-12 78.6 304 25.3
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 1.9e-12 77.8 346 24.9
Sabra08G0153200 Salix brachista HOM05D006708 ORTHO05D008321 1.9e-12 77.8 318 24.2
Sc19g0002530 Simmondsia chinensis HOM05D006708 ORTHO05D008321 3.2e-12 77.0 305 25.9
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 5.5e-12 76.3 198 26.8
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 7.2e-12 75.9 349 25.2
PGR031G3511 Punica granatum HOM05D006708 ORTHO05D008321 9.4e-12 75.5 302 25.5
EL10Ac3g06239 Beta vulgaris HOM05D006708 ORTHO05D008321 1.2e-11 75.1 325 24.6
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 1.6e-11 74.7 214 28.0
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 2.1e-11 74.3 238 28.2
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 3.6e-11 73.6 306 26.8
CiPaw.01G128700 Carya illinoinensis HOM05D006708 ORTHO05D008321 1.0e-10 72.0 199 26.6
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 1.8e-10 71.2 51 64.7
Sed0006346 Sechium edule HOM05D006708 ORTHO05D008321 1.1e-09 68.6 256 26.6
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 1.5e-09 68.2 179 27.9
MD16G1135500 Malus domestica HOM05D006708 ORTHO05D008321 1.5e-09 68.2 313 25.2
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 2.6e-09 67.4 304 26.0
Potri.002G061650 Populus trichocarpa HOM05D005655 ORTHO05D007386 5.7e-09 66.2 363 26.2
ClCG06G004170 Citrullus lanatus HOM05D006708 ORTHO05D008321 1.1e-07 62.0 206 26.7
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 4.1e-07 60.1 203 25.1
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 5.3e-07 59.7 347 24.2
Sabra02G0049900 Salix brachista HOM05D005655 ORTHO05D007386 5.3e-07 59.7 389 25.4
THA.LOC104816107 Tarenaya hassleriana HOM05D005655 ORTHO05D007386 5.3e-07 59.7 309 24.9
Phvul.007G085300 Phaseolus vulgaris HOM05D005655 ORTHO05D007386 2.6e-06 57.4 335 25.4
Cfa014219 Carpinus fangiana HOM05D006708 ORTHO05D008321 3.5e-06 57.0 202 25.2


User provided reference genes

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