Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR381G0279 Trochodendron aralioides HOM05D003452 ORTHO05D004046 4.9e-24 113.6 56 100.0
Cc07_g06390 Coffea canephora HOM05D003452 ORTHO05D004046 6.4e-16 86.7 52 73.1
Nn5g30393 Nelumbo nucifera HOM05D003452 ORTHO05D004046 1.9e-15 85.1 52 75.0
Lj7A83T65 Lonicera japonica HOM05D003452 ORTHO05D004046 1.6e-14 82.0 52 71.2
Thecc.01G062600 Theobroma cacao HOM05D003452 ORTHO05D004046 2.0e-14 81.6 52 69.2
Lj7A76T78 Lonicera japonica HOM05D003452 ORTHO05D004046 2.7e-14 81.3 52 71.2
Atru.chr3.258 Acer truncatum HOM05D003452 ORTHO05D004046 4.6e-14 80.5 52 63.5
Actinidia36467 Actinidia chinensis HOM05D003452 ORTHO05D004046 4.6e-14 80.5 52 67.3
BcaC06g34807 Brassica carinata HOM05D001905 ORTHO05D001820 4.6e-14 80.5 52 67.3
C07p24440 Brassica napus HOM05D001905 ORTHO05D001820 4.6e-14 80.5 52 67.3
BolC7t42964H Brassica oleracea HOM05D001905 ORTHO05D001820 4.6e-14 80.5 52 67.3
Oeu008437.1 Olea europaea HOM05D003452 ORTHO05D004046 6.0e-14 80.1 52 65.4
Duzib147G1492 Durio zibethinus HOM05D003452 ORTHO05D004046 7.8e-14 79.7 52 67.3
Hund13910 Selenicereus undatus HOM05D003452 ORTHO05D004046 1.0e-13 79.3 55 65.5
MSTRG.2860 Avicennia marina HOM05D003452 ORTHO05D004046 1.3e-13 79.0 52 67.3
Prupe.6G230000 Prunus persica HOM05D003452 ORTHO05D004046 1.3e-13 79.0 52 71.2
Hma1.2p1_0017F.1_g011830 Hydrangea macrophylla HOM05D003452 ORTHO05D004046 1.7e-13 78.6 52 67.3
RcHm_v2.0_Chr2g0106501 Rosa chinensis HOM05D003452 ORTHO05D004046 1.7e-13 78.6 52 71.2
EL10Ac6g15698 Beta vulgaris HOM05D003452 ORTHO05D004046 2.3e-13 78.2 52 67.3
BcaB02g09943 Brassica carinata HOM05D003452 ORTHO05D004046 2.3e-13 78.2 52 61.5
Lj1g0003061 Lotus japonicus HOM05D003452 ORTHO05D004046 2.3e-13 78.2 52 67.3
Lj5g0005600 Lotus japonicus HOM05D003452 ORTHO05D004046 2.3e-13 78.2 52 67.3
Rhsim10G0113000 Rhododendron simsii HOM05D003452 ORTHO05D004046 2.3e-13 78.2 52 69.2
Sp2g29430 Schrenkiella parvula HOM05D003452 ORTHO05D004046 3.0e-13 77.8 52 63.5
PGR004G0567 Punica granatum HOM05D003452 ORTHO05D004046 3.9e-13 77.4 52 65.4
Gohir.A11G230304 Gossypium hirsutum HOM05D003452 ORTHO05D004046 6.6e-13 76.6 52 65.4
Gohir.D11G232800 Gossypium hirsutum HOM05D003452 ORTHO05D004046 6.6e-13 76.6 52 65.4
Gorai.003G066000 Gossypium raimondii HOM05D003452 ORTHO05D004046 6.6e-13 76.6 52 65.4
ClCG01G017040 Citrullus lanatus HOM05D003452 ORTHO05D004046 8.6e-13 76.3 52 67.3
FAN23G2911 Fragaria x ananassa HOM05D003452 ORTHO05D004046 8.6e-13 76.3 52 65.4
FAN26G1073 Fragaria x ananassa HOM05D003452 ORTHO05D004046 8.6e-13 76.3 52 65.4
FAN26G2566 Fragaria x ananassa HOM05D003452 ORTHO05D004046 8.6e-13 76.3 52 65.4
FAN28G2117 Fragaria x ananassa HOM05D003452 ORTHO05D004046 8.6e-13 76.3 52 65.4
Carub.0008s2727 Capsella rubella HOM05D003452 ORTHO05D004046 1.1e-12 75.9 52 59.6
AL8G44100 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 1.5e-12 75.5 52 59.6
Lj4A155G89 Lonicera japonica HOM05D003452 ORTHO05D004046 1.5e-12 75.5 52 65.4
Aa31LG1G15770 Aethionema arabicum HOM05D003452 ORTHO05D004046 1.9e-12 75.1 55 58.2
Cpa.g.sc55.98 Carica papaya HOM05D003452 ORTHO05D004046 1.9e-12 75.1 52 63.5
MELO3C007581.2 Cucumis melo HOM05D003452 ORTHO05D004046 1.9e-12 75.1 52 65.4
FvH4_1g16600 Fragaria vesca HOM05D000005 ORTHO05D045876 1.9e-12 75.1 52 67.3
Glyma.17G167900 Glycine max HOM05D003452 ORTHO05D004046 1.9e-12 75.1 52 63.5
MD15G1287900 Malus domestica HOM05D003452 ORTHO05D004046 1.9e-12 75.1 50 68.0
TPR.G34364 Trifolium pratense HOM05D003452 ORTHO05D004046 1.9e-12 75.1 52 63.5
CiPaw.02G006400 Carya illinoinensis HOM05D003452 ORTHO05D004046 2.5e-12 74.7 52 65.4
FvH4_1g16590 Fragaria vesca HOM05D003452 ORTHO05D004046 2.5e-12 74.7 52 63.5
FAN19G1474 Fragaria x ananassa HOM05D003452 ORTHO05D004046 2.5e-12 74.7 52 63.5
MD02G1178000 Malus domestica HOM05D003452 ORTHO05D004046 2.5e-12 74.7 50 68.0
Cfa004056 Carpinus fangiana HOM05D003452 ORTHO05D004046 3.3e-12 74.3 52 65.4
Manes.12G151100 Manihot esculenta HOM05D003452 ORTHO05D004046 3.3e-12 74.3 56 66.1
Sed0010356 Sechium edule HOM05D003452 ORTHO05D004046 3.3e-12 74.3 52 65.4
A07p16710 Brassica napus HOM05D001905 ORTHO05D001820 4.3e-12 73.9 52 57.7
BraA07t29394Z Brassica rapa HOM05D001905 ORTHO05D001820 4.3e-12 73.9 52 57.7
CsaV3_6G043510 Cucumis sativus L. HOM05D003452 ORTHO05D004046 4.3e-12 73.9 52 65.4
Medtr1g023955 Medicago truncatula HOM05D003452 ORTHO05D004046 4.3e-12 73.9 52 65.4
Medtr1g423960 Medicago truncatula HOM05D003452 ORTHO05D004046 4.3e-12 73.9 52 65.4
CAN.G1778.2 Capsicum annuum HOM05D003452 ORTHO05D004046 5.6e-12 73.6 52 63.5
AUR62038246 Chenopodium quinoa HOM05D003452 ORTHO05D004046 5.6e-12 73.6 52 57.7
Sc18g0004770 Simmondsia chinensis HOM05D003452 ORTHO05D004046 7.3e-12 73.2 52 61.5
Solyc10g084160.2 Solanum lycopersicum HOM05D003452 ORTHO05D004046 9.5e-12 72.8 52 61.5
Sopen10g033610 Solanum pennellii HOM05D003452 ORTHO05D004046 9.5e-12 72.8 52 61.5
PGSC0003DMG400010461 Solanum tuberosum HOM05D003452 ORTHO05D004046 9.5e-12 72.8 52 61.5
TWI73G0964 Tripterygium wilfordii HOM05D003452 ORTHO05D004046 9.5e-12 72.8 53 54.7
unitig_744.g24371 Utricularia gibba HOM05D003452 ORTHO05D004046 9.5e-12 72.8 52 61.5
AT5G67240 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 1.2e-11 72.4 52 55.8
Migut.H00401 Erythranthe guttata HOM05D003452 ORTHO05D004046 1.2e-11 72.4 52 59.6
Eucgr.I00803 Eucalyptus grandis HOM05D003452 ORTHO05D004046 1.2e-11 72.4 52 57.7
vmacro05258 Vaccinium macrocarpon HOM05D003452 ORTHO05D004046 1.2e-11 72.4 52 63.5
CARHR239210 Cardamine hirsuta HOM05D003452 ORTHO05D004046 1.6e-11 72.0 52 61.5
AUR62003930 Chenopodium quinoa HOM05D003452 ORTHO05D004046 1.6e-11 72.0 52 55.8
DCAR_010856 Daucus carota HOM05D003452 ORTHO05D004046 1.6e-11 72.0 52 59.6
HanXRQChr11g0348391 Helianthus annuus HOM05D003452 ORTHO05D004046 1.6e-11 72.0 50 64.0
Os04g0650600 Oryza sativa ssp. japonica HOM05D003452 ORTHO05D004046 1.6e-11 72.0 52 63.5
Lalb_Chr05g0226301 Lupinus albus HOM05D003452 ORTHO05D004046 2.1e-11 71.6 52 59.6
Thhalv10003942m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 2.8e-11 71.2 52 57.7
GSVIVG01000228001 Vitis vinifera HOM05D003452 ORTHO05D004046 2.8e-11 71.2 52 59.6
Ciclev10025436m.g Citrus clementina HOM05D003452 ORTHO05D004046 4.7e-11 70.5 52 57.7
Haze_15356 Corylus avellana HOM05D003452 ORTHO05D004046 4.7e-11 70.5 52 61.5
THA.LOC104805170 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 4.7e-11 70.5 52 53.8
Phvul.003G240600 Phaseolus vulgaris HOM05D003452 ORTHO05D004046 6.2e-11 70.1 52 59.6
THA.LOC104827394 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 6.2e-11 70.1 52 53.8
QL12p009800 Quercus lobata HOM05D003452 ORTHO05D004046 8.0e-11 69.7 52 57.7
Ca_13403_v3 Cicer arietinum L. HOM05D003452 ORTHO05D004046 1.1e-10 69.3 53 58.5
Psat6g004200 Pisum sativum HOM05D003452 ORTHO05D004046 1.1e-10 69.3 52 57.7
CARHR280390 Cardamine hirsuta HOM05D003452 ORTHO05D004046 1.8e-10 68.6 52 55.8
SGA_v2.0_scaffold15G07361 Striga asiatica HOM05D003452 ORTHO05D004046 1.8e-10 68.6 52 57.7
Sp7g29190 Schrenkiella parvula HOM05D003452 ORTHO05D004046 2.3e-10 68.2 52 55.8
Lsat_1_v5_gn_3_90381 Lactuca sativa HOM05D003452 ORTHO05D004046 3.1e-10 67.8 50 60.0
VMungo0251G0295 Vigna mungo HOM05D003452 ORTHO05D004046 3.1e-10 67.8 52 57.7
Zm00001eb068290 Zea mays HOM05D003452 ORTHO05D004046 3.1e-10 67.8 52 57.7
Lalb_Chr09g0323371 Lupinus albus HOM05D003452 ORTHO05D004046 5.2e-10 67.0 52 57.7
Sabra07G0043000 Salix brachista HOM05D003452 ORTHO05D004046 5.2e-10 67.0 49 55.1
Atru.chr3.259 Acer truncatum HOM05D003452 ORTHO05D004046 6.8e-10 66.6 55 54.5
CAN.G1778.3 Capsicum annuum HOM05D003452 ORTHO05D004046 8.9e-10 66.2 42 66.7
ECA246G2207 Erigeron canadensis HOM05D003452 ORTHO05D004046 8.9e-10 66.2 50 64.0
AL6G15430 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 1.2e-09 65.9 53 58.5
Zm00001eb105110 Zea mays HOM05D002038 ORTHO05D002165 1.2e-09 65.9 52 55.8
COL.COLO4_16245 Corchorus olitorius HOM05D003452 ORTHO05D004046 1.5e-09 65.5 52 53.8
Potri.007G048000 Populus trichocarpa HOM05D003452 ORTHO05D004046 2.0e-09 65.1 50 50.0
Peaxi162Scf00472g00008 Petunia axillaris HOM05D003452 ORTHO05D004046 2.6e-09 64.7 41 70.7
Sp7g29060 Schrenkiella parvula HOM05D003452 ORTHO05D004046 2.6e-09 64.7 52 55.8
Aqoxy2G00584 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 5.8e-09 63.5 52 53.8
Oeu049888.1 Olea europaea HOM05D003452 ORTHO05D004046 5.8e-09 63.5 37 67.6
PSO447G0386 Papaver somniferum HOM05D003452 ORTHO05D004046 5.8e-09 63.5 52 51.9
PSO210G5185 Papaver somniferum HOM05D003452 ORTHO05D004046 7.5e-09 63.2 52 51.9
CARHR207730 Cardamine hirsuta HOM05D003452 ORTHO05D004046 1.3e-08 62.4 53 52.8
AT5G05540 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 2.2e-08 61.6 53 54.7
Lalb_Chr16g0378691 Lupinus albus HOM05D003452 ORTHO05D004046 2.2e-08 61.6 40 62.5
Aqoxy6G02896 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 2.9e-08 61.2 53 54.7
Thhalv10024938m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 3.7e-08 60.8 52 51.9
PSO210G6200 Papaver somniferum HOM05D003452 ORTHO05D004046 4.9e-08 60.5 50 52.0
PSO700G0024 Papaver somniferum HOM05D003452 ORTHO05D004046 6.4e-08 60.1 52 50.0
SEGI_05143 Sequoiadendron giganteum HOM05D003452 ORTHO05D004046 6.4e-08 60.1 46 60.9
PSO170G4023 Papaver somniferum HOM05D003452 ORTHO05D004046 8.3e-08 59.7 48 60.4
PSO384G3646 Papaver somniferum HOM05D003452 ORTHO05D004046 8.3e-08 59.7 53 50.9
ATR0006G091 Amborella trichopoda HOM05D003452 ORTHO05D004046 1.1e-07 59.3 47 55.3
PSO210G3568 Papaver somniferum HOM05D003452 ORTHO05D004046 1.4e-07 58.9 48 60.4
FAN23G1303 Fragaria x ananassa HOM05D000005 ORTHO05D012233 5.4e-07 57.0 41 63.4
CSS0049847 Camellia sinensis var. sinensis HOM05D003452 ORTHO05D004046 9.2e-07 56.2 53 47.2
BcaB01g00639 Brassica carinata HOM05D003452 ORTHO05D004046 1.6e-06 55.5 52 50.0
Carub.0006s0444 Capsella rubella HOM05D003452 ORTHO05D004046 1.6e-06 55.5 53 47.2
Thhalv10011012m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 2.7e-06 54.7 50 50.0
BcaC07g39477 Brassica carinata HOM05D003452 ORTHO05D004046 4.6e-06 53.9 52 48.1
A09p43220 Brassica napus HOM05D003452 ORTHO05D004046 4.6e-06 53.9 52 48.1
C08p25210 Brassica napus HOM05D003452 ORTHO05D004046 4.6e-06 53.9 52 48.1
BolC8t50143H Brassica oleracea HOM05D003452 ORTHO05D004046 4.6e-06 53.9 52 48.1
PSO339G0322 Papaver somniferum HOM05D003452 ORTHO05D004046 4.6e-06 53.9 53 47.2
Sp5g12020 Schrenkiella parvula HOM05D003452 ORTHO05D004046 4.6e-06 53.9 52 48.1


User provided reference genes

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