Gene: AT5G67240

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G67240
  • Transcript Identifier AT5G67240.1
  • Gene Type Coding gene
  • Location Chr5 : 26824454-26828098 : negative

Gene Family Information

  • ID HOM05D003452
  • #Genes/#Species 198/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G67240.1
  • symbol SDN3
  • uniprot Q8RXK2

Descriptions

  • Description small RNA degrading nuclease 3
  • Computational description small RNA degrading nuclease 3 (SDN3); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 2616 Blast hits to 2408 proteins in 300 species: Archae - 3; Bacteria - 109; Metazoa - 996; Fungi - 649; Plants - 362; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004527
IBA
Gene Ontologyexonuclease activity1
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004518
IEA
GOA Databasenuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0016592
IDA
Gene Ontologymediator complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013520 Exonuclease, RNase T/DNA polymerase III
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
IPR035979 RNA-binding domain superfamily
IPR034922 RNA exonuclease 1-like, exonuclease domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.9.2.6 RNA processing.mRNA silencing.miRNA pathway.miRNA nuclease (SDN1)