Gene: Sopen10g033610

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g033610
  • Transcript Identifier Sopen10g033610.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 80749298-80753987 : positive

Gene Family Information

  • ID HOM05D003452
  • #Genes/#Species 198/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g033610.1

Descriptions

  • Description small RNA degrading nuclease 3 (SDN3) | FUNCTIONS IN: exonuclease activity, nucleic acid binding | LOCATED IN: intracellular | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Exonuclease , Polynucleotidyl transferase, ribonuclease H fold , Exonuclease, RNase T/DNA polymerase III | BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 .
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010587
ISO
PLAZA Integrative OrthologymiRNA catabolic process AT3G50100

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0035198
ISO
PLAZA Integrative OrthologymiRNA binding AT3G50100
GO:0044748
ISO
PLAZA Integrative Orthology3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing AT3G50100
GO:0008408
ISO
PLAZA Integrative Orthology3'-5' exonuclease activity AT3G50100
GO:0000175
ISO
PLAZA Integrative Orthology3'-5'-exoribonuclease activity AT3G50100
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G50100

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016592
ISO
PLAZA Integrative Orthologymediator complex AT5G67240

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012337 Ribonuclease H-like superfamily
IPR013520 Exonuclease, RNase T/DNA polymerase III
IPR036397 Ribonuclease H superfamily
IPR034922 RNA exonuclease 1-like, exonuclease domain
Mapman id Description
16.9.2.6 RNA processing.mRNA silencing.miRNA pathway.miRNA nuclease (SDN1)