Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.8e-128 462.6 231 100.0
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 6.5e-99 364.4 231 80.1
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 2.5e-98 362.5 231 79.2
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 7.0e-93 344.4 231 77.1
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 4.0e-88 328.6 231 74.0
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 8.8e-88 327.4 233 74.2
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 9.8e-87 323.9 231 70.1
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 9.8e-87 323.9 233 74.2
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.7e-86 323.2 231 71.4
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 8.3e-86 320.9 231 70.6
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 1.8e-85 319.7 231 70.6
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 3.1e-85 318.9 232 72.8
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.2e-84 317.0 231 68.4
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 1.2e-84 317.0 231 68.8
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 2.7e-84 315.8 232 72.8
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 7.7e-84 314.3 232 71.1
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 1.0e-83 313.9 232 71.1
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.3e-83 312.8 239 69.9
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 2.9e-83 312.4 231 70.1
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 2.9e-83 312.4 233 70.4
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 1.1e-82 310.5 232 72.0
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 1.1e-82 310.5 235 70.2
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.5e-82 310.1 232 68.5
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.5e-82 309.3 231 67.1
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 3.3e-82 308.9 232 68.5
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 4.2e-82 308.5 231 71.0
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.6e-81 306.6 231 68.8
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 6.1e-81 304.7 231 68.0
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.4e-80 303.5 232 69.4
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 3.0e-80 302.4 236 68.6
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 4.0e-80 302.0 233 67.0
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 5.2e-80 301.6 233 66.5
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 6.8e-80 301.2 232 66.8
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.2e-79 300.4 231 68.0
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.2e-79 300.4 231 66.2
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.2e-79 300.4 233 66.5
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.5e-79 300.1 231 68.8
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.5e-79 300.1 231 67.5
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 3.4e-79 298.9 231 67.5
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 7.5e-79 297.7 232 66.4
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 1.3e-78 297.0 231 68.4
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 4.9e-78 295.0 231 66.2
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 6.3e-78 294.7 206 73.3
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.4e-77 293.5 236 67.4
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 3.1e-77 292.4 232 66.4
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 7.0e-77 291.2 231 64.9
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 7.0e-77 291.2 231 66.2
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 9.2e-77 290.8 231 68.0
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 9.2e-77 290.8 235 65.5
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.2e-76 290.4 232 65.1
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.2e-76 290.4 232 65.1
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 1.6e-76 290.0 232 66.8
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 5.9e-76 288.1 235 66.0
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 2.3e-75 286.2 231 65.4
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 2.3e-75 286.2 231 67.5
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 3.8e-75 285.4 231 64.5
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 5.0e-75 285.0 231 64.5
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 2.8e-73 279.3 231 64.5
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 3.6e-73 278.9 234 64.5
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 6.1e-73 278.1 232 63.4
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 1.8e-72 276.6 231 64.5
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 4.0e-72 275.4 232 63.8
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 6.8e-72 274.6 220 65.5
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 8.9e-72 274.2 205 67.8
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 1.5e-71 273.5 240 65.0
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 5.8e-71 271.6 236 62.3
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 4.9e-70 268.5 240 60.4
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.9e-69 266.5 240 57.9
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 3.2e-69 265.8 237 59.1
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 3.2e-69 265.8 240 60.8
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 9.2e-69 264.2 237 59.5
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 1.2e-68 263.8 240 57.1
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 2.7e-68 262.7 240 57.5
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 7.8e-68 261.2 240 57.1
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.0e-67 260.8 275 55.6
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 3.0e-67 259.2 210 63.8
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 3.9e-67 258.8 240 56.7
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 1.9e-66 256.5 222 62.6
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 4.3e-66 255.4 213 64.8
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 5.6e-66 255.0 188 67.6
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 7.3e-66 254.6 179 76.5
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 1.2e-65 253.8 233 61.4
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 1.4e-64 250.4 237 56.5
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 2.3e-64 249.6 207 63.3
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 5.2e-64 248.4 212 64.6
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 6.8e-64 248.1 211 59.2
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 6.8e-64 248.1 267 53.6
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 1.5e-63 246.9 211 62.6
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 7.5e-63 244.6 161 73.3
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 2.2e-62 243.0 233 59.2
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 8.3e-62 241.1 232 58.2
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 1.4e-61 240.4 219 59.4
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 3.2e-61 239.2 187 66.8
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.6e-60 236.9 179 72.1
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.6e-60 236.9 230 60.0
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 3.5e-60 235.7 231 56.7
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 7.8e-60 234.6 268 51.1
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 3.9e-59 232.3 232 58.2
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.5e-58 230.3 232 57.3
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 5.6e-58 228.4 223 55.6
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.4e-53 213.8 232 53.9
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 3.2e-53 212.6 200 58.0
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 9.2e-53 211.1 210 57.6
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 1.3e-51 207.2 122 80.3
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 8.6e-51 204.5 256 47.3
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.0e-47 193.4 225 53.3
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 4.4e-47 192.2 271 45.4
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 2.7e-44 183.0 121 70.2
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 1.7e-43 180.3 233 48.5
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.7e-43 180.3 180 57.2
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 6.6e-43 178.3 178 56.7
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 1.1e-42 177.6 262 44.3
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 3.3e-42 176.0 96 82.3
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 5.6e-42 175.3 187 53.5
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.1e-40 169.5 215 46.0
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 2.4e-37 159.8 200 47.5
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 4.2e-37 159.1 193 53.4
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 9.6e-34 147.9 107 68.2
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 2.4e-24 116.7 84 70.2
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 3.1e-24 116.3 180 45.0
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 4.5e-23 112.5 178 43.8
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 1.9e-21 107.1 67 65.7
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 9.3e-21 104.8 57 78.9
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 8.7e-19 98.2 69 63.8
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.3e-17 94.4 49 85.7
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.8e-16 90.5 57 77.2
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.3e-14 84.3 50 70.0
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.7e-14 84.0 48 85.4
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 2.2e-14 83.6 65 70.8
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.8e-14 82.8 48 85.4
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.9e-14 82.4 48 85.4
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.1e-13 81.3 71 63.4
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.1e-13 81.3 48 83.3
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.1e-13 81.3 48 81.2
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 7.9e-12 75.1 43 83.7
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.8e-11 73.9 43 83.7
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 3.1e-08 63.2 42 71.4
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.0e-07 60.5 91 44.0
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.9e-07 58.9 64 53.1
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 7.7e-07 58.5 29 89.7


User provided reference genes

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