Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 0.0e+00 1152.9 663 100.0
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 4.0e-210 735.3 664 61.6
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 2.2e-208 729.6 664 60.4
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 3.2e-207 725.7 667 60.3
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 3.5e-206 722.2 660 60.2
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.5e-204 716.8 664 66.9
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 5.3e-202 708.4 666 63.2
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 2.9e-200 702.6 665 62.1
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 1.0e-192 677.6 675 56.1
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.2e-192 676.4 664 57.2
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.9e-191 673.3 728 60.0
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.3e-189 667.2 674 57.1
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.8e-189 666.8 691 55.0
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.5e-188 663.7 669 57.5
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 2.8e-187 659.4 704 54.0
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 4.5e-185 652.1 725 52.7
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 5.0e-184 648.7 670 53.4
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 1.1e-183 647.5 638 55.8
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 2.5e-183 646.4 719 52.0
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 5.5e-183 645.2 707 52.2
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 5.5e-183 645.2 713 52.7
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.2e-182 644.0 694 57.5
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 2.3e-181 639.8 706 56.4
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 5.1e-181 638.6 669 54.0
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 5.1e-181 638.6 735 49.8
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 1.1e-180 637.5 708 51.7
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 3.3e-180 636.0 712 50.8
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 4.4e-180 635.6 681 52.9
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 5.7e-180 635.2 676 54.0
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 5.7e-180 635.2 711 52.9
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.3e-179 634.0 712 50.8
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.7e-179 633.6 650 55.1
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 2.2e-179 633.3 667 53.8
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 8.2e-179 631.3 666 55.1
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 1.4e-178 630.6 676 54.0
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 5.9e-177 625.2 706 51.0
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 2.2e-176 623.2 708 50.8
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 1.4e-175 620.5 670 53.7
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 1.4e-175 620.5 708 50.4
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 5.5e-175 618.6 669 53.7
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 9.4e-175 617.8 706 50.6
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 9.4e-175 617.8 720 50.3
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 3.6e-174 615.9 670 53.7
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 3.6e-174 615.9 715 50.3
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.7e-171 605.9 668 51.8
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 3.7e-171 605.9 668 53.3
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.8e-170 603.6 696 51.4
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 2.4e-170 603.2 712 48.7
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 2.0e-169 600.1 665 51.7
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 2.6e-169 599.7 723 49.7
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 7.7e-169 598.2 715 49.7
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.3e-168 597.4 767 47.5
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.9e-168 596.3 706 53.8
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 1.9e-167 593.6 665 50.8
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 2.5e-167 593.2 668 51.3
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 3.2e-167 592.8 708 49.2
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 1.6e-166 590.5 676 50.9
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.7e-166 589.7 761 47.2
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 5.2e-165 585.5 665 50.8
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 8.8e-165 584.7 665 50.7
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 2.8e-163 579.7 700 48.1
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 2.4e-162 576.6 799 48.6
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 5.3e-162 575.5 666 51.2
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.0e-160 571.2 769 45.4
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 2.2e-160 570.1 693 50.5
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 2.1e-158 563.5 735 46.7
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 2.1e-158 563.5 580 54.3
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 5.2e-157 558.9 668 48.7
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 8.8e-157 558.1 711 47.4
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 2.0e-156 557.0 725 47.3
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 2.8e-155 553.1 670 47.9
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 2.0e-153 547.0 715 46.3
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 3.5e-153 546.2 733 45.2
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 8.0e-150 535.0 663 47.5
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 4.9e-147 525.8 726 45.2
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.1e-146 524.6 726 45.0
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 8.6e-144 515.0 654 48.5
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.8e-142 510.0 684 45.9
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.6e-140 503.4 725 43.9
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 4.4e-140 502.7 731 41.5
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 2.2e-139 500.4 714 42.6
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.3e-136 491.1 731 41.0
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 6.6e-136 488.8 735 41.0
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 9.5e-135 485.0 611 48.9
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 1.6e-134 484.2 735 40.4
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.1e-133 481.5 673 47.3
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.4e-133 481.1 760 41.2
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 5.8e-132 475.7 771 40.9
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 6.4e-131 472.2 701 43.5
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 6.6e-128 462.2 630 52.1
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 1.6e-126 457.6 650 43.4
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.8e-126 456.8 668 43.3
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 5.4e-122 442.6 861 36.5
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.3e-119 433.3 706 41.2
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 3.6e-118 429.9 660 41.2
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.7e-112 411.0 502 48.6
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 1.6e-110 404.4 830 34.9
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 6.2e-110 402.5 836 34.6
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 1.3e-107 394.8 853 34.5
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.7e-107 394.4 857 34.0
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 3.8e-107 393.3 473 49.7
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 6.4e-99 365.9 721 37.2
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 4.6e-97 359.8 831 33.6
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 2.1e-94 350.9 651 37.3
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 2.5e-87 327.4 672 36.2
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.6e-86 324.7 677 35.9
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 1.5e-84 318.2 670 35.2
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.5e-79 301.6 668 38.5
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 1.1e-74 285.4 252 58.3
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 2.7e-73 280.8 624 35.4
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 8.8e-72 275.8 320 50.9
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.0e-67 262.3 649 35.7
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 3.8e-67 260.4 727 34.0
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 2.9e-59 234.2 196 57.7
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 6.5e-59 233.0 680 28.8
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 1.0e-56 225.7 315 43.5
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 8.8e-56 222.6 277 47.3
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 1.8e-53 214.9 907 26.6
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.5e-50 205.3 674 30.4
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.4e-40 172.2 176 49.4
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.4e-40 172.2 176 49.4
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 3.4e-39 167.5 347 32.9
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 3.7e-38 164.1 126 64.3
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.2e-36 159.1 258 38.8
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 1.3e-35 155.6 130 63.8
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 5.0e-27 127.1 216 38.4
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.1e-26 125.9 82 76.8
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.3e-22 112.5 103 55.3
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 9.2e-21 106.3 91 58.2
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 7.3e-18 96.7 124 42.7
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 1.8e-16 92.0 113 44.2
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.9e-13 82.0 158 40.5
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 1.8e-08 65.5 85 50.6
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 2.3e-08 65.1 54 61.1


User provided reference genes

Program Settings