Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g24440 Schrenkiella parvula HOM05D000809 ORTHO05D007733 1.1e-78 296.6 149 100.0
SpUn0651_0010 Schrenkiella parvula HOM05D000809 ORTHO05D007733 1.1e-78 296.6 149 100.0
BcaC06g32603 Brassica carinata HOM05D000809 ORTHO05D007733 2.4e-78 295.4 149 99.3
Thhalv10002483m.g Eutrema salsugineum HOM05D000809 ORTHO05D007733 3.1e-78 295.0 149 98.7
A03p58410 Brassica napus HOM05D000809 ORTHO05D007733 5.3e-78 294.3 149 98.7
C07p56430 Brassica napus HOM05D000809 ORTHO05D007733 5.3e-78 294.3 149 98.7
BolC7t46122H Brassica oleracea HOM05D000809 ORTHO05D007733 5.3e-78 294.3 149 98.7
BraA03t14902Z Brassica rapa HOM05D000809 ORTHO05D007733 5.3e-78 294.3 149 98.7
CARHR100520 Cardamine hirsuta HOM05D000809 ORTHO05D007733 2.0e-77 292.4 149 96.6
Carub.0003s2473 Capsella rubella HOM05D000809 ORTHO05D007733 8.5e-76 287.0 149 94.0
Aa31LG8G11120 Aethionema arabicum HOM05D000809 ORTHO05D007733 3.2e-75 285.0 149 92.6
AL3G39860 Arabidopsis lyrata HOM05D000809 ORTHO05D007733 3.2e-75 285.0 149 94.6
AT3G24430 Arabidopsis thaliana HOM05D000809 ORTHO05D007733 3.2e-75 285.0 149 94.6
THA.LOC104808749 Tarenaya hassleriana HOM05D000809 ORTHO05D007733 8.8e-73 276.9 149 90.6
GSVIVG01015424001 Vitis vinifera HOM05D000809 ORTHO05D007733 2.4e-70 268.9 149 87.2
COL.COLO4_34883 Corchorus olitorius HOM05D000809 ORTHO05D007733 2.3e-68 262.3 147 87.1
Prupe.7G227600 Prunus persica HOM05D000809 ORTHO05D007733 2.9e-68 261.9 149 85.9
Actinidia32693 Actinidia chinensis HOM05D000809 ORTHO05D007733 5.0e-68 261.2 145 89.0
MD15G1189200 Malus domestica HOM05D000809 ORTHO05D007733 8.6e-68 260.4 149 85.9
TAR626G0858 Trochodendron aralioides HOM05D000809 ORTHO05D007733 1.1e-67 260.0 149 85.2
CANSAT56G3015 Cannabis sativa HOM05D000809 ORTHO05D007733 1.5e-67 259.6 149 85.9
Duzib168G1885 Durio zibethinus HOM05D000809 ORTHO05D007733 1.5e-67 259.6 147 85.0
Gohir.D05G022766 Gossypium hirsutum HOM05D000809 ORTHO05D007733 1.5e-67 259.6 147 86.4
Gohir.D05G022900 Gossypium hirsutum HOM05D000809 ORTHO05D007733 1.5e-67 259.6 147 86.4
Gorai.009G023100 Gossypium raimondii HOM05D000809 ORTHO05D007733 1.5e-67 259.6 147 86.4
Gohir.A05G021400 Gossypium hirsutum HOM05D000809 ORTHO05D007733 5.5e-67 257.7 147 85.7
AUR62011020 Chenopodium quinoa HOM05D000809 ORTHO05D007733 9.5e-67 256.9 145 84.8
Atru.chr7.1304 Acer truncatum HOM05D000809 ORTHO05D007733 1.2e-66 256.5 149 81.9
Rhsim01G0091800 Rhododendron simsii HOM05D000809 ORTHO05D007733 1.6e-66 256.1 141 87.9
Aqoxy7G01822 Aquilegia oxysepala HOM05D000809 ORTHO05D007733 2.1e-66 255.8 146 84.2
RcHm_v2.0_Chr2g0091011 Rosa chinensis HOM05D000809 ORTHO05D007733 2.1e-66 255.8 148 84.5
TAR624G0463 Trochodendron aralioides HOM05D000809 ORTHO05D007733 2.1e-66 255.8 147 83.7
MELO3C025316.2 Cucumis melo HOM05D000809 ORTHO05D007733 2.8e-66 255.4 147 81.6
TWI34G1334 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 2.8e-66 255.4 149 82.6
FvH4_1g05310 Fragaria vesca HOM05D000809 ORTHO05D007733 3.6e-66 255.0 148 83.8
FAN19G0453 Fragaria x ananassa HOM05D000809 ORTHO05D007733 3.6e-66 255.0 148 83.8
FAN26G0422 Fragaria x ananassa HOM05D000809 ORTHO05D007733 3.6e-66 255.0 148 83.8
FAN26G2813 Fragaria x ananassa HOM05D000809 ORTHO05D007733 3.6e-66 255.0 148 83.8
Nn2g11810 Nelumbo nucifera HOM05D000809 ORTHO05D007733 3.6e-66 255.0 141 87.9
vmacro20667 Vaccinium macrocarpon HOM05D000809 ORTHO05D007733 3.6e-66 255.0 145 84.1
CDE04G2267 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 4.7e-66 254.6 141 85.8
CsaV3_1G030840 Cucumis sativus L. HOM05D000809 ORTHO05D007733 4.7e-66 254.6 147 81.0
QL02p085975 Quercus lobata HOM05D000809 ORTHO05D007733 4.7e-66 254.6 147 85.0
CDE06G2677 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 6.1e-66 254.2 141 85.8
Thecc.09G114200 Theobroma cacao HOM05D000809 ORTHO05D007733 6.1e-66 254.2 141 86.5
TWI63G1087 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 6.1e-66 254.2 149 82.6
Ciclev10007988m.g Citrus clementina HOM05D000809 ORTHO05D007733 1.0e-65 253.4 146 84.2
PGR102G2432 Punica granatum HOM05D000809 ORTHO05D007733 1.0e-65 253.4 145 84.1
SalBow1G2443 Salvia bowleyana HOM05D000809 ORTHO05D007733 1.0e-65 253.4 143 85.3
Ah.10g029140 Amaranthus hybridus HOM05D000809 ORTHO05D007733 1.4e-65 253.1 141 85.1
Manes.16G070800 Manihot esculenta HOM05D000809 ORTHO05D007733 1.4e-65 253.1 145 84.1
Cpa.g.sc23.132 Carica papaya HOM05D000809 ORTHO05D007733 1.8e-65 252.7 148 85.1
Potri.018G076600 Populus trichocarpa HOM05D000809 ORTHO05D007733 1.8e-65 252.7 146 82.2
CSS0004763 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 2.3e-65 252.3 145 84.8
CSS0005642 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 2.3e-65 252.3 145 84.8
Haze_25686 Corylus avellana HOM05D000809 ORTHO05D007733 2.3e-65 252.3 145 84.8
Sed0012141 Sechium edule HOM05D000809 ORTHO05D007733 2.3e-65 252.3 147 81.0
Cfa003287 Carpinus fangiana HOM05D000809 ORTHO05D007733 3.0e-65 251.9 141 85.8
Lsat_1_v5_gn_8_93401 Lactuca sativa HOM05D000809 ORTHO05D007733 3.0e-65 251.9 141 86.5
Cc06_g09380 Coffea canephora HOM05D000809 ORTHO05D007733 4.0e-65 251.5 145 83.4
Oeu000378.3 Olea europaea HOM05D000809 ORTHO05D007733 5.2e-65 251.1 143 85.3
unitig_899.g15426 Utricularia gibba HOM05D000809 ORTHO05D007733 5.2e-65 251.1 141 85.1
EL10Ac8g18530 Beta vulgaris HOM05D000809 ORTHO05D007733 6.8e-65 250.8 145 82.8
ECA238G4585 Erigeron canadensis HOM05D000809 ORTHO05D007733 6.8e-65 250.8 141 85.1
ATR0037G048 Amborella trichopoda HOM05D000809 ORTHO05D007733 8.9e-65 250.4 141 85.1
Glyma.07G089200 Glycine max HOM05D000809 ORTHO05D007733 1.2e-64 250.0 140 86.4
Eucgr.C03953 Eucalyptus grandis HOM05D000809 ORTHO05D007733 2.0e-64 249.2 142 85.2
PSO063G5751 Papaver somniferum HOM05D000809 ORTHO05D007733 2.6e-64 248.8 146 81.5
arahy.Tifrunner.gnm1.ann1.JACH1V Arachis hypogaea HOM05D000809 ORTHO05D007733 3.4e-64 248.4 140 85.0
MSTRG.10680 Avicennia marina HOM05D000809 ORTHO05D007733 5.7e-64 247.7 143 83.2
CiPaw.03G234800 Carya illinoinensis HOM05D000809 ORTHO05D007733 5.7e-64 247.7 149 80.5
HanXRQChr05g0137991 Helianthus annuus HOM05D000809 ORTHO05D007733 5.7e-64 247.7 145 82.8
Sabra18G0064600 Salix brachista HOM05D000809 ORTHO05D007733 5.7e-64 247.7 155 79.4
SGA_v2.0_scaffold109G31030 Striga asiatica HOM05D000809 ORTHO05D007733 5.7e-64 247.7 143 82.5
VMungo0464G1974 Vigna mungo HOM05D000809 ORTHO05D007733 5.7e-64 247.7 139 86.3
Glyma.09G187800 Glycine max HOM05D000809 ORTHO05D007733 7.5e-64 247.3 140 85.0
Nitab4.5_0001672g0130 Nicotiana tabacum HOM05D000809 ORTHO05D007733 7.5e-64 247.3 145 80.0
Nitab4.5_0003537g0040 Nicotiana tabacum HOM05D000809 ORTHO05D007733 7.5e-64 247.3 145 80.0
PSO782G1122 Papaver somniferum HOM05D000809 ORTHO05D007733 7.5e-64 247.3 145 81.4
Peaxi162Scf00546g00322 Petunia axillaris HOM05D000809 ORTHO05D007733 7.5e-64 247.3 144 81.2
arahy.Tifrunner.gnm1.ann1.G2DL39 Arachis hypogaea HOM05D000809 ORTHO05D007733 9.8e-64 246.9 140 85.0
ClCG06G010380 Citrullus lanatus HOM05D000809 ORTHO05D007733 9.8e-64 246.9 158 75.9
Migut.K00460 Erythranthe guttata HOM05D000809 ORTHO05D007733 1.3e-63 246.5 143 83.9
Zm00001eb089070 Zea mays HOM05D000809 ORTHO05D007733 1.3e-63 246.5 141 82.3
Phvul.004G160900 Phaseolus vulgaris HOM05D000809 ORTHO05D007733 1.7e-63 246.1 139 84.9
PGSC0003DMG400000383 Solanum tuberosum HOM05D000809 ORTHO05D007733 1.7e-63 246.1 145 80.0
AUR62033393 Chenopodium quinoa HOM05D000809 ORTHO05D007733 2.8e-63 245.4 139 84.2
Nn8g39257 Nelumbo nucifera HOM05D000809 ORTHO05D007733 2.8e-63 245.4 148 80.4
DCAR_012086 Daucus carota HOM05D000809 ORTHO05D007733 3.7e-63 245.0 145 83.4
Solyc12g007010.2 Solanum lycopersicum HOM05D000809 ORTHO05D007733 3.7e-63 245.0 145 79.3
Sopen12g002980 Solanum pennellii HOM05D000809 ORTHO05D007733 3.7e-63 245.0 145 79.3
CAN.G1710.9 Capsicum annuum HOM05D000809 ORTHO05D007733 4.9e-63 244.6 144 80.6
Lj7C645G9 Lonicera japonica HOM05D000809 ORTHO05D007733 4.9e-63 244.6 145 82.1
Ca_25514_v3 Cicer arietinum L. HOM05D000809 ORTHO05D007733 8.3e-63 243.8 140 83.6
HPP92_006444 Vanilla planifolia HOM05D000809 ORTHO05D007733 8.3e-63 243.8 147 80.3
Lj2g0016022 Lotus japonicus HOM05D000809 ORTHO05D007733 1.4e-62 243.0 143 81.8
Lalb_Chr24g0397641 Lupinus albus HOM05D000809 ORTHO05D007733 1.8e-62 242.7 140 82.9
Medtr6g086600 Medicago truncatula HOM05D000809 ORTHO05D007733 4.1e-62 241.5 140 83.6
TPR.G31450 Trifolium pratense HOM05D000809 ORTHO05D007733 1.6e-61 239.6 140 82.1
Psat1g039560 Pisum sativum HOM05D000809 ORTHO05D007733 2.0e-61 239.2 140 81.4
SEGI_18085 Sequoiadendron giganteum HOM05D000809 ORTHO05D007733 6.6e-60 234.2 141 78.7
SMO118G0383 Selaginella moellendorffii HOM05D000809 ORTHO05D007733 1.1e-59 233.4 142 76.1
Eucgr.C04130 Eucalyptus grandis HOM05D000809 ORTHO05D007733 8.0e-58 227.3 144 77.8
MD02G1056300 Malus domestica HOM05D000809 ORTHO05D007733 5.2e-57 224.6 147 76.9
Pp3c19_20070 Physcomitrium patens HOM05D000809 ORTHO05D007733 6.8e-57 224.2 146 73.3
Mapoly0100s0060 Marchantia polymorpha HOM05D000809 ORTHO05D007733 8.9e-57 223.8 140 72.9
Sc08g0007210 Simmondsia chinensis HOM05D000809 ORTHO05D007733 1.3e-55 219.9 125 84.8
CBR_g30185 Chara braunii HOM05D000809 ORTHO05D007733 1.3e-52 209.9 139 70.5
RcHm_v2.0_Chr3g0496131 Rosa chinensis HOM05D000809 ORTHO05D007733 3.9e-52 208.4 126 80.2
Hund09189 Selenicereus undatus HOM05D000809 ORTHO05D007733 1.2e-50 203.4 154 67.5
Os01g0719700 Oryza sativa ssp. japonica HOM05D000809 ORTHO05D007733 9.2e-46 187.2 100 87.0
Eucgr.C03960 Eucalyptus grandis HOM05D000809 ORTHO05D007733 1.3e-44 183.3 111 79.3
Actinidia07419 Actinidia chinensis HOM05D000809 ORTHO05D007733 3.9e-44 181.8 148 68.2
Pp3c8_23290 Physcomitrium patens HOM05D000809 ORTHO05D007733 7.5e-40 167.5 145 59.3
Cre01.g045902 Chlamydomonas reinhardtii HOM05D000809 ORTHO05D007733 2.6e-24 115.9 139 48.2
PRCOL_00006186 Prasinoderma coloniale HOM05D000809 ORTHO05D007733 7.6e-24 114.4 155 42.6
AagrBONN_evm.TU.Sc2ySwM_344.1144 Anthoceros agrestis HOM05D009372 ORTHO05D013436 1.7e-23 113.2 63 79.4
Eucgr.C03955 Eucalyptus grandis HOM05D000809 ORTHO05D007733 1.4e-22 110.2 70 77.1
Eucgr.C04131 Eucalyptus grandis HOM05D000809 ORTHO05D007733 1.9e-22 109.8 57 86.0
Gorai.001G260200 Gossypium raimondii HOM05D000809 ORTHO05D016264 2.5e-19 99.4 77 59.7
Oeu013437.1 Olea europaea HOM05D000396 ORTHO05D007733 3.3e-19 99.0 60 81.7
Gohir.A12G059950 Gossypium hirsutum HOM05D000809 ORTHO05D016264 1.3e-18 97.1 77 58.4
Gohir.D10G166101 Gossypium hirsutum HOM05D000809 ORTHO05D016264 1.3e-18 97.1 77 58.4
AagrBONN_evm.TU.Sc2ySwM_187.2 Anthoceros agrestis HOM05D009372 ORTHO05D013436 1.3e-15 87.0 48 79.2
AagrBONN_evm.TU.Sc2ySwM_340.881 Anthoceros agrestis HOM05D000809 ORTHO05D023486 4.6e-13 78.6 42 78.6
MCO05G106 Micromonas commoda HOM05D000809 ORTHO05D007733 7.9e-13 77.8 145 35.2
AagrBONN_evm.TU.Sc2ySwM_344.2654 Anthoceros agrestis HOM05D000809 ORTHO05D023486 4.8e-10 68.6 37 78.4
Dinv36606 Davidia involucrata HOM05D000809 ORTHO05D007733 6.2e-10 68.2 41 80.5
Gohir.D05G069650 Gossypium hirsutum HOM05D000809 ORTHO05D016264 6.2e-10 68.2 39 76.9
AagrBONN_evm.TU.Sc2ySwM_340.840 Anthoceros agrestis HOM05D009372 ORTHO05D023486 4.0e-09 65.5 72 47.2
RcHm_v2.0_Chr2g0147101 Rosa chinensis HOM05D000809 ORTHO05D007733 3.8e-07 58.9 32 84.4


User provided reference genes

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