Gene: Pp3c19_20070
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c19_20070
- Transcript Identifier Pp3c19_20070V3.1
- Gene Type Coding gene
- Location Chr19 : 13330395-13334820 : negative
Gene Family Information
- ID HOM05D000809
- #Genes/#Species 730/100
- Phylogenetic origin
- ID ORTHO05D007733
- #Genes/#Species 127/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c19_20070V3.1
- pacid 32939929
- alias Phpat.019G068400
- alias Pp1s414_7V6
- alias Phypa_227402
- uniprot A9U187
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016226 | IBA IEA | GOA Database | iron-sulfur cluster assembly | |
| GO:0016226 | IEA | InterPro | iron-sulfur cluster assembly | |
| GO:0040029 | ISO | PLAZA Homology (enrichment) | regulation of gene expression, epigenetic | HOM05D000809 |
| GO:0010048 | ISO | PLAZA Homology (enrichment) | vernalization response | HOM05D000809 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0051536 | IEA | GOA Database | iron-sulfur cluster binding | |
| GO:0051536 | IEA | InterPro | iron-sulfur cluster binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0051539 | IBA | GOA Database | 4 iron, 4 sulfur cluster binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | IBA IEA | GOA Database | chloroplast stroma | |
| GO:0009507 | IEA | GOA Database | chloroplast |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR044304 | Iron-sulfur protein NUBPL-like |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR034904 | Fe-S cluster assembly domain superfamily |
| IPR038492 | GBBH-like, N-terminal domain superfamily |
| IPR002744 | MIP18 family-like |
| IPR033756 | Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 |
| Mapman id | Description |
|---|---|
| 1.1.4.3.1 | Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.assembly factor (HCF101) |
| 7.11.1.2.3 | Coenzyme metabolism.iron-sulfur cluster assembly machinery.plastidial SUF system.transfer phase.scaffold protein (HCF101) |