Gene: PGR102G2432
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR102G2432
- Transcript Identifier PGR102G2432.03
- Gene Type Coding gene
- Location NC_045129.1 : 2308046-2312957 : negative
Gene Family Information
- ID HOM05D000809
- #Genes/#Species 730/100
- Phylogenetic origin
- ID ORTHO05D007733
- #Genes/#Species 127/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- pid XP_031386105.1
- name LOC116199766
- name XM_031530245.1
- id gene-LOC116199766
- uniprot A0A6P8CP36
Descriptions
- product fe-S cluster assembly factor HCF101, chloroplastic, transcript variant X1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016226 | IEA | GOA Database | iron-sulfur cluster assembly | |
| GO:0016226 | IEA | InterPro | iron-sulfur cluster assembly | |
| GO:0040029 | ISO | PLAZA Homology (enrichment) | regulation of gene expression, epigenetic | HOM05D000809 |
| GO:0010048 | ISO | PLAZA Homology (enrichment) | vernalization response | HOM05D000809 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0051536 | IEA | GOA Database | iron-sulfur cluster binding | |
| GO:0051536 | IEA | InterPro | iron-sulfur cluster binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT3G24430 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT3G24430 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR002744 | MIP18 family-like |
| IPR034904 | Fe-S cluster assembly domain superfamily |
| IPR010376 | Gamma-butyrobetaine hydroxylase-like, N-terminal |
| IPR038492 | GBBH-like, N-terminal domain superfamily |
| IPR033756 | Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 |
| IPR044304 | Iron-sulfur protein NUBPL-like |
| Mapman id | Description |
|---|---|
| 1.1.4.3.1 | Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.assembly factor (HCF101) |
| 7.11.1.2.3 | Coenzyme metabolism.iron-sulfur cluster assembly machinery.plastidial SUF system.transfer phase.scaffold protein (HCF101) |