Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 0.0e+00 1116.7 545 100.0
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 0.0e+00 1088.9 545 97.6
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 1.9e-306 1055.0 545 94.3
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.6e-305 1052.0 545 94.7
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 3.9e-304 1047.3 545 92.8
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 2.6e-303 1044.6 545 93.9
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 5.7e-303 1043.5 546 94.0
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 1.8e-296 1021.9 541 90.2
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 5.3e-293 1010.4 547 90.7
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 5.3e-293 1010.4 547 90.7
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 9.4e-290 999.6 552 90.8
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 1.6e-289 998.8 548 90.1
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 1.6e-289 998.8 547 90.1
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 2.7e-289 998.0 547 90.1
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 8.9e-272 939.9 537 83.6
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 6.2e-265 917.1 525 83.8
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 3.7e-262 907.9 541 81.3
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 6.4e-262 907.1 537 80.1
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 1.4e-261 906.0 537 80.1
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 2.4e-261 905.2 541 81.0
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 1.6e-260 902.5 536 79.9
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.7e-259 899.0 525 81.1
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 3.9e-259 897.9 545 80.0
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 3.9e-259 897.9 525 80.6
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 5.0e-259 897.5 546 80.0
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 1.5e-258 896.0 520 81.9
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 2.5e-258 895.2 524 80.7
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 2.5e-258 895.2 518 82.0
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 2.5e-258 895.2 522 81.0
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 3.3e-258 894.8 519 81.1
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 9.5e-258 893.3 498 85.1
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 1.2e-257 892.9 525 80.8
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 6.2e-257 890.6 549 79.2
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 1.1e-256 889.8 525 81.1
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 1.8e-256 889.0 525 80.2
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 1.8e-256 889.0 545 78.3
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 3.1e-256 888.3 520 80.6
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 4.0e-256 887.9 545 78.3
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 8.9e-256 886.7 545 78.2
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 1.2e-255 886.3 524 80.9
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.5e-255 885.9 527 80.5
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 2.0e-255 885.6 545 78.0
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 2.6e-255 885.2 544 77.9
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 4.4e-255 884.4 545 78.7
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 7.5e-255 883.6 536 78.5
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 9.8e-255 883.2 578 74.4
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 1.3e-254 882.9 519 80.0
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 1.3e-254 882.9 522 80.1
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 2.9e-254 881.7 551 77.3
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.1e-253 879.8 547 77.3
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 2.4e-253 878.6 525 79.4
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 2.4e-253 878.6 520 79.4
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 5.4e-253 877.5 553 76.9
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 5.4e-253 877.5 538 78.1
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 5.4e-253 877.5 525 79.2
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 7.1e-253 877.1 512 80.3
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 7.1e-253 877.1 520 79.4
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 6.0e-252 874.0 534 78.3
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 3.9e-251 871.3 517 80.1
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 5.1e-251 870.9 524 79.2
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 7.3e-250 867.1 595 71.4
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 9.5e-250 866.7 527 78.2
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 2.8e-249 865.1 530 77.5
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 3.6e-249 864.8 545 77.6
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 6.2e-249 864.0 542 77.1
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 8.1e-249 863.6 545 77.6
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 1.4e-248 862.8 540 77.4
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 1.4e-248 862.8 525 77.9
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 4.0e-248 861.3 527 77.8
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 8.9e-248 860.1 524 77.7
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 1.5e-247 859.4 539 76.4
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 4.4e-247 857.8 544 76.8
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 6.4e-246 854.0 527 76.7
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 1.4e-245 852.8 521 78.3
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 4.1e-245 851.3 536 78.0
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 1.2e-244 849.7 526 76.6
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 2.1e-244 849.0 522 77.8
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 2.5e-242 842.0 549 75.6
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 9.6e-242 840.1 536 75.9
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 1.6e-241 839.3 519 78.0
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 3.6e-241 838.2 489 80.8
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 4.7e-241 837.8 539 76.4
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 2.4e-240 835.5 521 77.4
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 9.0e-240 833.6 508 77.8
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.2e-239 833.2 469 82.7
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 1.5e-239 832.8 504 80.0
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 2.2e-238 828.9 537 73.4
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 6.4e-238 827.4 483 79.5
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 1.4e-237 826.2 537 74.5
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.9e-237 825.9 517 77.0
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 3.2e-237 825.1 524 76.3
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.2e-236 823.2 485 79.2
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 6.0e-236 820.8 556 73.0
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 5.3e-232 807.7 540 72.6
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 2.6e-231 805.4 528 74.2
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 2.6e-231 805.4 543 72.7
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 1.3e-230 803.1 528 74.2
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 1.3e-230 803.1 543 72.7
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 3.8e-230 801.6 511 75.0
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 1.1e-224 783.5 562 69.0
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 1.0e-219 766.9 520 70.8
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 1.3e-219 766.5 499 72.7
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.8e-216 756.1 520 69.6
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.8e-216 756.1 473 74.6
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 1.5e-210 736.5 520 68.3
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 3.1e-208 728.8 516 68.6
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 6.9e-208 727.6 426 78.9
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 2.0e-207 726.1 398 83.2
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 2.5e-205 719.2 423 78.5
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 4.3e-202 708.4 394 84.0
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 3.1e-192 675.6 413 83.5
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 1.7e-182 643.3 413 74.8
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 2.9e-182 642.5 398 74.4
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.9e-181 639.8 492 64.8
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 1.4e-179 633.6 332 86.1
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 5.0e-158 562.0 492 57.5
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 2.3e-155 553.1 512 55.1
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 1.6e-151 540.4 283 87.3
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.8e-148 529.6 395 66.1
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.9e-136 490.3 346 68.2
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 7.8e-135 485.0 451 54.1
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 1.1e-131 474.6 418 59.3
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 8.9e-131 471.5 463 53.1
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 1.7e-118 430.6 320 65.9
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.1e-104 384.8 275 69.8
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 5.3e-91 339.3 181 86.7
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.0e-85 320.9 213 75.1
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 7.4e-85 318.9 182 82.4
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 2.2e-81 307.4 172 83.7
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 3.5e-58 230.3 135 78.5
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 4.9e-44 183.3 117 75.2
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 4.1e-43 180.3 102 80.4
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 4.1e-35 153.7 81 84.0
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 9.2e-27 125.9 67 80.6
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 6.6e-25 119.8 58 98.3
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 1.9e-24 118.2 60 93.3
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 1.9e-24 118.2 60 93.3
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 5.2e-22 110.2 55 92.7
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 7.6e-21 106.3 50 96.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 5.2e-14 83.6 108 44.4


User provided reference genes

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