Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g13230 Schrenkiella parvula HOM05D002702 ORTHO05D003416 4.0e-93 344.7 173 100.0
Thhalv10027195m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 6.5e-43 177.9 246 46.3
Sp1g06510 Schrenkiella parvula HOM05D002702 ORTHO05D003416 1.1e-39 167.2 357 37.3
BcaB03g11606 Brassica carinata HOM05D002702 ORTHO05D003416 4.7e-33 145.2 216 44.4
Thhalv10011362m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 1.0e-32 144.1 343 35.0
Sp3g07740 Schrenkiella parvula HOM05D002702 ORTHO05D003416 2.2e-30 136.3 324 33.6
CARHR083720 Cardamine hirsuta HOM05D002702 ORTHO05D003416 1.4e-29 133.7 324 34.9
AL5G10240 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 2.4e-29 132.9 260 39.6
Aa31LG3G1860 Aethionema arabicum HOM05D002702 ORTHO05D003416 1.0e-27 127.5 327 32.1
Carub.0002s1026 Capsella rubella HOM05D002702 ORTHO05D003416 2.2e-27 126.3 300 34.7
A03p35990 Brassica napus HOM05D002702 ORTHO05D003416 8.5e-27 124.4 324 33.0
AL3G20510 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 2.5e-26 122.9 337 32.9
C03p43620 Brassica napus HOM05D002702 ORTHO05D003416 3.6e-25 119.0 324 32.4
BcaC01g04231 Brassica carinata HOM05D002702 ORTHO05D003416 4.7e-25 118.6 324 32.4
BolC3t16631H Brassica oleracea HOM05D002702 ORTHO05D003416 4.7e-25 118.6 324 32.4
BraA03t12771Z Brassica rapa HOM05D002702 ORTHO05D003416 4.7e-25 118.6 180 43.3
AT3G09360 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 6.1e-25 118.2 318 32.4
AL2G39140 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 1.4e-24 117.1 308 33.4
Thhalv10020503m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 4.0e-24 115.5 182 42.3
BcaB02g08778 Brassica carinata HOM05D002702 ORTHO05D003416 2.2e-22 109.8 295 31.2
CARHR248300 Cardamine hirsuta HOM05D002702 ORTHO05D003416 2.2e-22 109.8 286 33.6
BcaB03g11605 Brassica carinata HOM05D002702 ORTHO05D003416 4.8e-22 108.6 325 31.7
Carub.0003s0847 Capsella rubella HOM05D002702 ORTHO05D003416 4.8e-22 108.6 324 31.8
AT2G01280 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 3.1e-21 105.9 306 30.7
THA.LOC104816256 Tarenaya hassleriana HOM05D002702 ORTHO05D003416 1.2e-20 104.0 359 28.7
Gohir.D11G170800 Gossypium hirsutum HOM05D002702 ORTHO05D003416 5.9e-20 101.7 274 32.1
C04p09810 Brassica napus HOM05D002702 ORTHO05D003416 1.3e-19 100.5 287 30.3
BcaC02g11927 Brassica carinata HOM05D002702 ORTHO05D003416 2.9e-19 99.4 148 40.5
BcaC02g12571 Brassica carinata HOM05D002702 ORTHO05D003416 5.0e-19 98.6 148 41.2
C04p00530 Brassica napus HOM05D002702 ORTHO05D003416 5.0e-19 98.6 148 41.2
BolC4t21688H Brassica oleracea HOM05D002702 ORTHO05D003416 5.0e-19 98.6 148 41.2
BolC4t22589H Brassica oleracea HOM05D002702 ORTHO05D003416 1.5e-18 97.1 299 29.1
AL357U10010 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 5.2e-16 88.6 185 36.8
Duzib128G1433 Durio zibethinus HOM05D002702 ORTHO05D003416 1.5e-15 87.0 328 27.4
SGA_v2.0_scaffold17G07984 Striga asiatica HOM05D002702 ORTHO05D003416 4.4e-15 85.5 117 41.0
AT2G45100 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 9.8e-15 84.3 170 35.3
COL.COLO4_20084 Corchorus olitorius HOM05D002702 ORTHO05D003416 2.8e-14 82.8 157 35.0
FvH4_5g32090 Fragaria vesca HOM05D002702 ORTHO05D003416 2.8e-14 82.8 349 24.9
Nitab4.5_0000322g0190 Nicotiana tabacum HOM05D002702 ORTHO05D003416 2.8e-14 82.8 181 33.1
TWI60G0137 Tripterygium wilfordii HOM05D002702 ORTHO05D003416 3.7e-14 82.4 159 38.4
Phvul.001G053501 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 6.3e-14 81.6 150 35.3
Thecc.05G241000 Theobroma cacao HOM05D002702 ORTHO05D003416 8.3e-14 81.3 157 35.0
Gorai.007G182800 Gossypium raimondii HOM05D002702 ORTHO05D003416 1.1e-13 80.9 328 26.8
Cpa.g.c27574 Carica papaya HOM05D002702 ORTHO05D003416 1.4e-13 80.5 185 32.4
Phvul.001G106433 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 1.4e-13 80.5 173 34.1
Zm00001eb294470 Zea mays HOM05D002702 ORTHO05D003416 1.8e-13 80.1 158 34.8
Prupe.1G180700 Prunus persica HOM05D002702 ORTHO05D003416 3.1e-13 79.3 225 30.7
arahy.Tifrunner.gnm1.ann1.LW5WEF Arachis hypogaea HOM05D002702 ORTHO05D003416 5.4e-13 78.6 302 26.5
Gohir.A11G164500 Gossypium hirsutum HOM05D002702 ORTHO05D003416 5.4e-13 78.6 328 26.2
Zm00001eb190030 Zea mays HOM05D002702 ORTHO05D003416 5.4e-13 78.6 137 37.2
Os05g0305100 Oryza sativa ssp. japonica HOM05D002702 ORTHO05D003416 7.0e-13 78.2 146 34.9
Psat5g080560 Pisum sativum HOM05D002702 ORTHO05D003416 7.0e-13 78.2 296 26.7
RcHm_v2.0_Chr7g0228131 Rosa chinensis HOM05D002702 ORTHO05D003416 1.2e-12 77.4 349 24.4
SMO117G0141 Selaginella moellendorffii HOM05D002702 ORTHO05D003416 1.2e-12 77.4 220 30.0
Glyma.19G117700 Glycine max HOM05D002702 ORTHO05D003416 1.6e-12 77.0 175 32.6
Aqoxy4G00362 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 2.0e-12 76.6 312 26.9
AT1G30455 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 2.0e-12 76.6 71 59.2
Nn7g37357 Nelumbo nucifera HOM05D002702 ORTHO05D003416 2.7e-12 76.3 153 33.3
Sc25g0001160 Simmondsia chinensis HOM05D002702 ORTHO05D003416 2.7e-12 76.3 170 31.8
HPP92_004334 Vanilla planifolia HOM05D002702 ORTHO05D003416 2.7e-12 76.3 140 35.0
Glyma.16G035400 Glycine max HOM05D002702 ORTHO05D003416 3.5e-12 75.9 188 32.4
ClCG03G016660 Citrullus lanatus HOM05D002702 ORTHO05D003416 4.5e-12 75.5 160 31.9
Oeu044210.1 Olea europaea HOM05D002702 ORTHO05D003416 4.5e-12 75.5 150 34.0
TAR636G0479 Trochodendron aralioides HOM05D002702 ORTHO05D003416 4.5e-12 75.5 151 33.1
Lalb_Chr14g0370781 Lupinus albus HOM05D002702 ORTHO05D003416 7.7e-12 74.7 157 33.8
FvH4_4g11810 Fragaria vesca HOM05D002702 ORTHO05D003416 1.0e-11 74.3 40 85.0
FAN07G2025 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.0e-11 74.3 40 85.0
FAN12G2138 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.0e-11 74.3 40 85.0
FAN12G2960 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.0e-11 74.3 40 85.0
FAN17G2691 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.0e-11 74.3 40 85.0
Gohir.A13G160900 Gossypium hirsutum HOM05D002702 ORTHO05D003416 1.0e-11 74.3 150 32.7
FAN18G3773 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.3e-11 73.9 152 32.2
Gohir.D13G166200 Gossypium hirsutum HOM05D002702 ORTHO05D003416 1.3e-11 73.9 156 32.1
Gorai.013G196300 Gossypium raimondii HOM05D002702 ORTHO05D003416 1.3e-11 73.9 156 32.1
MBI17_g29780_MAGBIO Magnolia biondii HOM05D002702 ORTHO05D003416 1.7e-11 73.6 151 31.8
Haze_06436 Corylus avellana HOM05D002702 ORTHO05D003416 2.2e-11 73.2 177 31.6
Peaxi162Scf00793g00323 Petunia axillaris HOM05D002702 ORTHO05D003416 2.2e-11 73.2 204 27.9
Peaxi162Scf00978g00036 Petunia axillaris HOM05D002702 ORTHO05D003416 2.2e-11 73.2 36 83.3
QL05p014746 Quercus lobata HOM05D002702 ORTHO05D003416 2.9e-11 72.8 180 30.6
CsaV3_1G039340 Cucumis sativus L. HOM05D002702 ORTHO05D003416 3.8e-11 72.4 194 29.9
Dinv25037 Davidia involucrata HOM05D002702 ORTHO05D003416 3.8e-11 72.4 189 30.2
Solyc01g088720.3 Solanum lycopersicum HOM05D002702 ORTHO05D003416 6.5e-11 71.6 36 80.6
Sopen01g035560 Solanum pennellii HOM05D002702 ORTHO05D003416 6.5e-11 71.6 36 80.6
MD04G1033900 Malus domestica HOM05D002702 ORTHO05D003416 8.5e-11 71.2 181 29.8
Nitab4.5_0003719g0060 Nicotiana tabacum HOM05D002702 ORTHO05D003416 8.5e-11 71.2 188 29.3
Mapoly0001s0017 Marchantia polymorpha HOM05D002702 ORTHO05D003416 1.5e-10 70.5 169 30.2
Lj2g0010098 Lotus japonicus HOM05D002702 ORTHO05D003416 1.9e-10 70.1 157 31.2
Rhsim05G0035300 Rhododendron simsii HOM05D002702 ORTHO05D003416 1.9e-10 70.1 36 80.6
RcHm_v2.0_Chr4g0409121 Rosa chinensis HOM05D002702 ORTHO05D003416 1.9e-10 70.1 190 29.5
Eucgr.A02144 Eucalyptus grandis HOM05D002702 ORTHO05D003416 2.5e-10 69.7 150 29.3
QL05p040855 Quercus lobata HOM05D002702 ORTHO05D003416 3.2e-10 69.3 36 83.3
Zm00001eb210070 Zea mays HOM05D002702 ORTHO05D003416 3.2e-10 69.3 36 83.3
Actinidia07964 Actinidia chinensis HOM05D002702 ORTHO05D003416 4.2e-10 68.9 173 30.1
Ah.04g159560 Amaranthus hybridus HOM05D002702 ORTHO05D003416 4.2e-10 68.9 150 32.0
ATR0697G089 Amborella trichopoda HOM05D002702 ORTHO05D003416 4.2e-10 68.9 145 31.0
FAN06G3121 Fragaria x ananassa HOM05D002702 ORTHO05D003416 4.2e-10 68.9 40 80.0
PSO170G0409 Papaver somniferum HOM05D002702 ORTHO05D003416 4.2e-10 68.9 183 29.5
CDE10G0041 Ceratophyllum demersum HOM05D002702 ORTHO05D003416 5.5e-10 68.6 36 80.6
Ca_04466_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 5.5e-10 68.6 194 28.4
Migut.K00214 Erythranthe guttata HOM05D002702 ORTHO05D003416 5.5e-10 68.6 320 25.6
arahy.Tifrunner.gnm1.ann1.9I2R1K Arachis hypogaea HOM05D002702 ORTHO05D003416 7.2e-10 68.2 206 27.2
Manes.08G152300 Manihot esculenta HOM05D002702 ORTHO05D003416 9.4e-10 67.8 36 77.8
TPR.G9547 Trifolium pratense HOM05D002702 ORTHO05D003416 9.4e-10 67.8 183 29.0
CANSAT80G2236 Cannabis sativa HOM05D002702 ORTHO05D003416 1.2e-09 67.4 36 77.8
Cc02_g13440 Coffea canephora HOM05D002702 ORTHO05D003416 1.2e-09 67.4 167 30.5
FAN13G2753 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.2e-09 67.4 349 24.6
Lalb_Chr02g0157411 Lupinus albus HOM05D002702 ORTHO05D003416 1.2e-09 67.4 196 28.6
Aqoxy5G01199 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 1.6e-09 67.0 356 23.9
Medtr6g027510 Medicago truncatula HOM05D002702 ORTHO05D003416 2.1e-09 66.6 36 75.0
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 2.1e-09 66.6 152 28.9
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 2.1e-09 66.6 198 29.3
Zm00001eb342490 Zea mays HOM05D002702 ORTHO05D003416 2.1e-09 66.6 166 34.3
Aqoxy4G00023 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 2.7e-09 66.2 222 25.7
EL10Ac3g05092 Beta vulgaris HOM05D002702 ORTHO05D003416 2.7e-09 66.2 156 30.8
CANSAT80G1653 Cannabis sativa HOM05D002702 ORTHO05D003416 2.7e-09 66.2 151 31.1
GSVIVG01029946001 Vitis vinifera HOM05D002702 ORTHO05D003416 6.1e-09 65.1 96 43.8
CiPaw.08G118400 Carya illinoinensis HOM05D002702 ORTHO05D003416 8.0e-09 64.7 189 30.7
Lj1A1071G54 Lonicera japonica HOM05D002702 ORTHO05D003416 8.0e-09 64.7 143 34.3
Zm00001eb367360 Zea mays HOM05D002702 ORTHO05D003416 8.0e-09 64.7 170 31.2
PSO832G1528 Papaver somniferum HOM05D002702 ORTHO05D003416 1.0e-08 64.3 188 29.3
CiPaw.15G041500 Carya illinoinensis HOM05D002702 ORTHO05D003416 1.4e-08 63.9 180 30.0
MCO16G125 Micromonas commoda HOM05D002702 ORTHO05D003416 1.4e-08 63.9 36 72.2
AUR62005908 Chenopodium quinoa HOM05D002702 ORTHO05D003416 1.8e-08 63.5 181 29.3
PGR042G0279 Punica granatum HOM05D002702 ORTHO05D003416 1.8e-08 63.5 190 27.9
Psat3g086240 Pisum sativum HOM05D002702 ORTHO05D003416 2.3e-08 63.2 36 77.8
CSS0039994 Camellia sinensis var. sinensis HOM05D002702 ORTHO05D003416 3.0e-08 62.8 202 28.7
Ciclev10019321m.g Citrus clementina HOM05D002702 ORTHO05D003416 3.0e-08 62.8 377 24.1
DCAR_031564 Daucus carota HOM05D002702 ORTHO05D003416 3.0e-08 62.8 150 29.3
SalBow2G1241 Salvia bowleyana HOM05D002702 ORTHO05D003416 3.0e-08 62.8 265 25.7
CAN.G388.55 Capsicum annuum HOM05D002702 ORTHO05D003416 4.0e-08 62.4 275 25.1
HanXRQChr04g0118861 Helianthus annuus HOM05D002702 ORTHO05D003416 4.0e-08 62.4 36 66.7
AUR62028157 Chenopodium quinoa HOM05D002702 ORTHO05D003416 5.2e-08 62.0 181 29.3
AagrBONN_evm.TU.Sc2ySwM_228.5644 Anthoceros agrestis HOM05D002702 ORTHO05D003416 6.8e-08 61.6 151 29.1
CBR_g30840 Chara braunii HOM05D002702 ORTHO05D003416 6.8e-08 61.6 36 75.0
Atru.chr2.91 Acer truncatum HOM05D002702 ORTHO05D003416 8.8e-08 61.2 334 23.4
Ca_08321_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 8.8e-08 61.2 205 28.8
ECA233G5306 Erigeron canadensis HOM05D002702 ORTHO05D003416 8.8e-08 61.2 36 63.9
PSO210G0347 Papaver somniferum HOM05D002702 ORTHO05D003416 8.8e-08 61.2 195 28.2
PRCOL_00005646 Prasinoderma coloniale HOM05D002702 ORTHO05D003416 1.2e-07 60.8 36 69.4
Lsat_1_v5_gn_1_126300 Lactuca sativa HOM05D002702 ORTHO05D003416 1.5e-07 60.5 36 63.9
CBR_g31712 Chara braunii HOM05D002702 ORTHO05D003416 2.0e-07 60.1 36 72.2
Potri.001G246100 Populus trichocarpa HOM05D002702 ORTHO05D003416 2.0e-07 60.1 36 66.7
Sabra16G0149300 Salix brachista HOM05D002702 ORTHO05D003416 2.0e-07 60.1 36 66.7
Atru.chr2.1532 Acer truncatum HOM05D002702 ORTHO05D003416 3.4e-07 59.3 187 27.8
SHI21356 Sapria himalayana HOM05D002702 ORTHO05D000023 3.4e-07 59.3 36 66.7
Hund21093 Selenicereus undatus HOM05D002702 ORTHO05D003416 7.5e-07 58.2 81 45.7
AL4G44180 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 9.8e-07 57.8 67 52.2
Carub.0002s0029 Capsella rubella HOM05D002702 ORTHO05D003416 4.9e-06 55.5 35 71.4
SMO196G0286 Selaginella moellendorffii HOM05D002702 ORTHO05D003416 4.9e-06 55.5 189 25.9
Actinidia39734 Actinidia chinensis HOM05D002702 ORTHO05D003416 6.3e-06 55.1 30 73.3
Nitab4.5_0002341g0020 Nicotiana tabacum HOM05D002702 ORTHO05D003416 6.3e-06 55.1 188 31.4
FAN08G0285 Fragaria x ananassa HOM05D002702 ORTHO05D003416 8.3e-06 54.7 324 23.1
Nitab4.5_0000175g0200 Nicotiana tabacum HOM05D002702 ORTHO05D003416 8.3e-06 54.7 186 25.8


User provided reference genes

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