Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 0.0e+00 1361.7 696 100.0
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 2.7e-265 918.7 689 73.4
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.6e-262 909.4 701 72.2
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.1e-262 909.1 690 71.3
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 2.8e-262 908.7 699 72.0
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.1e-261 906.7 696 72.7
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 3.1e-261 905.2 697 72.2
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.2e-227 792.7 715 62.2
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.8e-224 783.1 716 60.9
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.8e-222 775.8 725 59.4
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 5.0e-211 738.4 713 58.5
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.7e-195 686.8 654 60.1
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.5e-175 620.5 674 54.3
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 4.9e-174 615.5 712 51.5
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.1e-157 558.5 478 64.2
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 8.7e-147 525.0 736 44.4
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.1e-133 481.5 726 42.8
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.1e-133 481.5 722 41.4
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 2.5e-133 480.3 757 41.0
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 7.1e-133 478.8 723 43.6
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.2e-132 478.0 733 42.4
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.5e-130 471.1 736 41.3
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 2.8e-129 466.8 742 41.4
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.8e-129 466.8 734 41.7
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 4.8e-129 466.1 742 41.4
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 8.2e-129 465.3 749 40.9
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.1e-128 464.9 715 42.0
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.1e-128 463.0 377 67.4
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.1e-125 454.9 738 41.1
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 4.2e-125 453.0 743 41.6
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 7.2e-125 452.2 713 41.5
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 3.6e-124 449.9 737 39.6
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.0e-123 448.4 752 39.0
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.0e-123 448.4 692 42.1
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.8e-123 447.6 737 38.8
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.3e-123 447.2 734 39.2
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.0e-123 446.8 708 40.5
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 5.1e-123 446.0 667 41.1
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 6.7e-123 445.7 747 39.4
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 8.8e-123 445.3 733 40.4
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 1.5e-122 444.5 747 38.8
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 2.0e-122 444.1 705 41.1
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 2.5e-122 443.7 678 41.3
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 5.7e-122 442.6 713 41.1
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.1e-120 438.3 662 41.8
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.4e-120 438.0 726 40.9
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 5.3e-120 436.0 675 42.2
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 6.9e-120 435.6 671 41.1
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 9.1e-120 435.3 708 41.1
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.2e-119 434.9 671 43.2
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 7.7e-119 432.2 675 41.8
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.0e-118 431.8 741 38.9
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 2.2e-118 430.6 744 39.0
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.2e-118 430.6 672 41.1
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.8e-118 429.9 684 40.8
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 3.8e-118 429.9 724 39.9
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.0e-118 429.5 692 39.5
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 6.5e-118 429.1 682 41.3
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 8.5e-118 428.7 711 39.0
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 8.5e-118 428.7 706 41.6
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.9e-117 427.6 724 40.5
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.5e-117 427.2 683 39.8
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 3.2e-117 426.8 730 39.0
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.5e-117 426.0 710 40.0
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.6e-116 424.5 670 40.0
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.8e-115 421.0 687 38.9
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.8e-115 421.0 712 39.2
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.3e-115 420.6 678 40.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.9e-115 419.9 738 39.3
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 8.8e-115 418.7 738 38.5
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 8.8e-115 418.7 738 39.7
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.1e-114 418.3 726 38.8
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.5e-114 417.9 729 39.5
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.5e-114 417.9 730 39.6
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.5e-114 417.9 710 38.6
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 4.4e-114 416.4 712 39.5
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 7.4e-114 415.6 694 40.2
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 8.2e-113 412.1 865 35.5
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 8.2e-113 412.1 717 38.5
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.1e-112 411.8 599 41.9
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.5e-111 407.9 691 38.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.5e-111 406.8 723 38.6
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.7e-110 404.4 755 36.8
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.7e-110 404.4 711 37.8
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.7e-110 404.4 742 38.1
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 2.5e-109 400.6 742 38.3
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.2e-108 398.3 726 39.1
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.6e-108 397.9 668 39.1
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 3.6e-108 396.7 689 38.6
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 4.7e-108 396.4 672 39.3
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.8e-107 394.4 720 37.4
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 8.8e-107 392.1 675 40.6
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 3.3e-106 390.2 617 40.5
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 8.2e-105 385.6 675 40.6
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.4e-104 384.0 695 39.7
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 5.3e-104 382.9 655 37.7
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 2.6e-103 380.6 664 37.2
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.2e-102 377.5 685 37.2
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 8.5e-102 375.6 671 37.3
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.5e-101 374.8 696 36.8
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.9e-101 374.4 659 38.7
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.7e-94 351.3 687 35.1
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.8e-91 341.3 426 46.2
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.8e-91 341.3 520 40.6
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 4.0e-91 340.1 663 35.0
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.3e-89 335.1 503 41.7
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.9e-87 326.2 576 37.5
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.5e-85 320.9 683 35.4
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 4.7e-84 316.6 407 45.5
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.4e-83 315.1 535 40.4
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.8e-83 314.7 523 40.3
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 6.8e-83 312.8 458 44.5
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 2.3e-75 287.7 653 33.4
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 8.9e-75 285.8 535 36.6
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.0e-71 274.6 694 30.7
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.0e-70 272.3 417 42.4
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 3.3e-69 267.3 413 42.9
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.6e-66 257.7 700 29.3
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.8e-59 235.0 351 43.0
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 4.1e-56 223.8 291 44.7
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 9.2e-56 222.6 667 28.0
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.6e-55 221.9 367 41.7
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 2.1e-55 221.5 726 29.5
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.3e-54 218.0 293 44.7
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 3.0e-54 217.6 385 39.2
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 8.1e-52 209.5 200 57.5
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.1e-47 194.9 363 36.6
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 2.2e-41 174.9 677 24.5
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.9e-41 174.5 624 25.5
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.8e-41 174.1 214 52.3
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 5.4e-40 170.2 164 52.4
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 6.2e-36 156.8 133 68.4
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 6.4e-33 146.7 228 43.9
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 6.4e-33 146.7 475 27.6
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 3.9e-30 137.5 434 28.1
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 4.8e-28 130.6 107 58.9
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.4e-27 129.0 267 31.8
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.8e-27 128.6 197 40.6
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.4e-27 128.3 152 47.4
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.2e-26 125.9 107 57.0
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.5e-24 118.2 247 35.6
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.2e-23 115.9 132 46.2
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-23 115.5 587 23.3
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 4.6e-23 114.0 238 36.6
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.8e-22 112.1 158 45.6
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.3e-22 111.7 229 34.9
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.3e-17 95.9 68 70.6
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 3.8e-17 94.4 155 36.8
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 6.1e-15 87.0 75 60.0
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.7e-14 83.6 219 27.9
AT4G01335 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 4.3e-13 80.9 100 53.0
AT4G01340 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 1.4e-11 75.9 59 67.8
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.5e-10 70.9 212 25.5
BcaC02g09546 Brassica carinata HOM05D037504 ORTHO05D032183 7.7e-10 70.1 178 34.8
Carub.0005s0182 Capsella rubella HOM05D000082 ORTHO05D000038 3.2e-08 64.7 41 65.9
C04p43980 Brassica napus HOM05D037504 ORTHO05D032183 5.5e-08 63.9 91 46.2
BolC4t25980H Brassica oleracea HOM05D037504 ORTHO05D032183 5.5e-08 63.9 91 46.2
AL5G12560 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 7.2e-08 63.5 49 57.1
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 9.4e-08 63.2 300 24.3
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 7.9e-07 60.1 69 42.0
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 1.8e-06 58.9 69 43.5
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 2.3e-06 58.5 172 29.1
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 5.1e-06 57.4 79 40.5


User provided reference genes

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