Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 3.0e-201 704.9 346 100.0
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 2.0e-128 463.0 329 72.9
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 9.1e-121 437.6 320 70.9
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.5e-120 436.8 324 70.7
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 3.4e-120 435.6 320 70.3
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 2.9e-119 432.6 322 69.9
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 6.5e-119 431.4 324 70.7
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 2.7e-117 426.0 324 69.4
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 8.0e-117 424.5 320 69.7
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.0e-116 424.1 320 70.3
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 2.8e-114 416.0 320 69.4
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 3.7e-114 415.6 322 68.0
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 3.7e-82 309.3 319 58.9
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 3.9e-79 299.3 319 56.7
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.6e-77 293.9 318 55.7
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 8.0e-77 291.6 318 55.0
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.4e-76 290.8 318 54.7
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 4.1e-73 279.3 318 53.8
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 1.8e-44 184.1 329 38.9
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 3.7e-37 159.8 244 40.6
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.8e-35 152.5 243 41.2
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.3e-34 151.4 247 40.5
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 5.5e-33 146.0 275 37.1
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.5e-33 146.0 271 38.0
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 9.3e-33 145.2 257 37.0
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 1.2e-32 144.8 171 51.5
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 1.2e-32 144.8 171 51.5
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 2.7e-32 143.7 178 51.1
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.8e-31 141.0 236 39.0
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 1.9e-30 137.5 258 36.4
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 7.4e-30 135.6 202 40.6
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 9.6e-30 135.2 218 41.3
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 9.6e-30 135.2 230 40.0
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.8e-29 132.9 297 35.0
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.1e-28 131.7 297 34.7
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.8e-28 131.0 245 35.1
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 2.4e-28 130.6 240 38.3
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 5.3e-28 129.4 328 30.8
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 1.5e-27 127.9 425 27.3
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 7.6e-27 125.6 329 30.4
BcaB05g22585 Brassica carinata HOM05D006496 ORTHO05D008390 1.3e-26 124.8 283 37.8
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.7e-26 124.4 329 30.4
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 2.9e-26 123.6 239 33.1
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 8.4e-26 122.1 226 35.8
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.1e-25 121.7 249 35.7
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 7.1e-25 119.0 214 36.4
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.2e-24 118.2 211 35.1
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.6e-24 117.9 242 32.6
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.1e-24 117.5 232 34.1
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 2.7e-24 117.1 366 28.1
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 3.9e-23 113.2 245 30.6
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 5.1e-23 112.8 216 31.9
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 6.7e-23 112.5 238 33.2
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.5e-22 111.3 237 31.2
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 1.9e-22 110.9 368 28.3
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.3e-22 110.2 245 31.8
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 3.3e-22 110.2 330 27.9
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 4.3e-22 109.8 316 28.8
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 5.7e-22 109.4 224 36.6
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 7.4e-22 109.0 360 28.9
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.3e-21 108.2 261 27.6
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 1.6e-21 107.8 234 35.5
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 3.7e-21 106.7 205 35.1
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.1e-20 105.1 111 51.4
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.1e-20 103.6 124 48.4
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 3.1e-20 103.6 235 30.6
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 1.2e-19 101.7 272 28.7
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-19 101.7 300 28.3
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 1.2e-19 101.7 257 29.6
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.6e-19 100.5 325 30.5
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 2.6e-19 100.5 257 30.4
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 7.7e-19 99.0 248 32.3
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 7.7e-19 99.0 181 37.6
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 7.7e-19 99.0 125 45.6
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 7.7e-19 99.0 133 41.4
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-18 97.8 341 27.3
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 1.7e-18 97.8 350 28.6
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 2.2e-18 97.4 214 34.6
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 5.0e-18 96.3 312 29.8
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 6.5e-18 95.9 328 28.4
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 8.5e-18 95.5 311 26.4
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.4e-17 94.7 250 27.6
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 2.1e-16 90.9 200 33.0
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 1.8e-15 87.8 143 38.5
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 3.9e-15 86.7 138 34.1
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 5.1e-15 86.3 201 27.9
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 5.7e-14 82.8 225 32.0
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.7e-13 80.1 212 29.2
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 3.7e-13 80.1 153 32.7
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 6.3e-13 79.3 224 29.5
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 2.4e-12 77.4 139 36.0
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 9.1e-12 75.5 223 31.8
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 2.0e-11 74.3 158 36.1
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 5.9e-11 72.8 206 29.6
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 3.8e-10 70.1 164 32.9
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.1e-09 68.6 117 37.6
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.5e-09 67.4 136 33.1
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 3.2e-09 67.0 64 51.6
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 4.2e-09 66.6 79 45.6
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 5.5e-09 66.2 62 53.2
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 5.5e-09 66.2 259 25.9
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 9.4e-09 65.5 229 26.2
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.2e-08 65.1 107 38.3
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.2e-08 65.1 106 34.9
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 1.2e-08 65.1 47 61.7
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 7.9e-08 62.4 50 56.0
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 7.9e-08 62.4 45 62.2
PSO782G3336 Papaver somniferum HOM05D003520 ORTHO05D003332 7.9e-08 62.4 136 33.1
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.0e-07 62.0 44 63.6
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.0e-07 62.0 104 34.6
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.0e-07 62.0 255 25.1
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 1.0e-07 62.0 122 36.1
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.0e-07 62.0 53 56.6
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 1.4e-07 61.6 122 36.1
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.8e-07 61.2 120 35.0
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 2.3e-07 60.8 154 31.2
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.0e-07 60.5 55 56.4
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 3.9e-07 60.1 114 36.0
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 3.9e-07 60.1 137 30.7
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 5.1e-07 59.7 121 32.2
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 6.7e-07 59.3 48 64.6
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 8.8e-07 58.9 122 33.6
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 8.8e-07 58.9 141 29.8
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 8.8e-07 58.9 72 41.7
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.1e-06 58.5 136 28.7
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.1e-06 58.5 189 26.5
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.5e-06 58.2 121 37.2
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 2.0e-06 57.8 132 28.0
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.6e-06 57.4 159 28.3
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 2.6e-06 57.4 119 32.8
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 3.3e-06 57.0 170 28.2
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 3.3e-06 57.0 117 34.2
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 4.4e-06 56.6 120 35.0
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 5.7e-06 56.2 119 32.8
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 7.4e-06 55.8 123 31.7
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 7.4e-06 55.8 117 33.3
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 7.4e-06 55.8 131 29.0
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 9.7e-06 55.5 113 36.3
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 9.7e-06 55.5 131 29.0


User provided reference genes

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