Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 9.3e-281 969.5 487 100.0
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 5.8e-222 774.2 460 82.4
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 6.0e-219 764.2 462 82.3
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 3.0e-218 761.9 464 81.9
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 3.9e-218 761.5 463 81.9
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 5.0e-218 761.1 462 82.3
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 9.5e-217 756.9 509 74.3
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 8.1e-216 753.8 463 81.2
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 5.2e-215 751.1 463 81.4
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 9.2e-212 740.3 433 84.3
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 5.4e-204 714.5 466 77.3
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 4.3e-193 678.3 430 78.8
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 2.4e-191 672.5 471 74.1
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 8.4e-189 664.1 466 75.1
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 4.6e-187 658.3 484 69.2
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 1.7e-181 639.8 467 71.5
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 8.4e-181 637.5 474 71.9
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 5.3e-167 591.7 463 63.1
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 7.4e-161 571.2 463 63.9
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 1.6e-131 473.8 333 75.4
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 6.8e-90 335.5 433 48.5
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.7e-85 320.9 332 52.1
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.3e-84 316.6 502 39.0
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.6e-83 314.3 502 39.6
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.4e-82 311.2 449 42.1
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 4.0e-82 309.7 442 42.1
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 6.9e-82 308.9 449 41.2
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.2e-81 308.1 492 38.0
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 2.0e-81 307.4 481 39.7
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 4.4e-81 306.2 435 41.1
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 2.9e-80 303.5 484 39.9
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 3.8e-80 303.1 453 41.5
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 4.9e-80 302.8 458 40.8
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 8.4e-80 302.0 447 41.8
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.1e-79 301.6 449 40.1
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 1.1e-79 301.6 371 48.0
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.4e-79 301.2 369 46.3
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 2.4e-79 300.4 478 38.7
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 2.4e-79 300.4 448 39.5
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 3.2e-79 300.1 453 40.6
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 4.2e-79 299.7 477 39.2
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 7.1e-79 298.9 446 40.8
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.5e-78 296.6 434 41.7
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 6.0e-78 295.8 445 38.7
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 6.0e-78 295.8 451 38.6
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 1.0e-77 295.0 489 39.3
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 1.7e-77 294.3 485 40.6
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 3.9e-77 293.1 460 40.2
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 1.5e-76 291.2 485 39.2
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.9e-76 290.8 454 39.4
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 2.5e-76 290.4 505 37.6
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.5e-76 290.4 424 41.0
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 2.5e-76 290.4 432 40.5
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 4.3e-76 289.7 441 39.2
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 5.6e-76 289.3 488 37.5
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.3e-76 288.9 431 39.9
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.3e-76 288.9 445 38.4
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 7.3e-76 288.9 428 39.7
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 7.3e-76 288.9 452 38.7
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 7.3e-76 288.9 450 40.2
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 9.6e-76 288.5 368 43.5
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.3e-75 288.1 472 38.6
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 8.1e-75 285.4 437 38.9
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.1e-74 285.0 388 43.0
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 2.4e-74 283.9 427 39.8
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 2.4e-74 283.9 377 43.0
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 5.3e-74 282.7 493 36.9
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 6.9e-74 282.3 405 41.2
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 2.6e-73 280.4 433 37.9
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.6e-73 280.4 486 38.1
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 4.5e-73 279.6 428 41.4
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 4.5e-73 279.6 472 36.7
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 9.9e-73 278.5 386 40.7
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 1.3e-72 278.1 461 38.0
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.7e-72 277.7 386 40.9
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.7e-72 277.7 386 41.2
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.4e-71 274.6 446 39.5
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 1.9e-71 274.2 459 39.2
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 3.2e-71 273.5 381 42.5
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 3.2e-71 273.5 442 38.2
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 3.2e-71 273.5 374 44.1
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.1e-71 272.3 434 39.9
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 9.3e-71 271.9 386 39.9
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 2.7e-70 270.4 453 38.9
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 6.0e-70 269.2 434 41.0
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.0e-69 268.5 421 38.5
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.0e-69 268.5 448 38.4
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.0e-69 268.5 439 37.8
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.8e-69 267.7 439 37.8
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 6.7e-69 265.8 520 35.6
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 1.5e-68 264.6 365 43.6
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 4.3e-68 263.1 448 38.2
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 7.4e-68 262.3 465 37.6
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 7.4e-68 262.3 446 37.9
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 9.6e-68 261.9 477 36.7
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 6.9e-66 255.8 375 41.3
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 9.0e-66 255.4 421 37.1
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.5e-65 254.6 476 36.8
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.6e-65 253.8 426 39.9
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 5.8e-65 252.7 391 39.4
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 4.9e-64 249.6 418 39.0
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 8.4e-64 248.8 303 44.9
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 8.4e-64 248.8 427 37.5
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 1.4e-63 248.1 483 36.0
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 7.1e-63 245.7 481 34.1
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 3.5e-62 243.4 399 39.1
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.4e-58 231.5 424 36.1
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 3.1e-58 230.3 493 33.3
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.0e-56 225.3 309 45.0
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 7.1e-55 219.2 251 49.8
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 2.1e-54 217.6 446 34.3
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.6e-54 216.5 433 34.4
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 6.7e-53 212.6 505 32.1
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 6.7e-53 212.6 480 32.9
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 4.3e-52 209.9 260 45.4
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 1.6e-51 208.0 292 44.9
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 4.8e-51 206.5 351 39.9
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 4.1e-50 203.4 410 34.4
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.0e-45 188.7 335 37.6
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 8.8e-45 185.7 355 34.1
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 1.9e-44 184.5 496 31.0
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.7e-44 183.0 356 36.2
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 1.7e-43 181.4 489 32.9
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 2.2e-43 181.0 308 37.7
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.2e-43 181.0 298 39.6
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 6.9e-42 176.0 485 30.7
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.2e-41 175.3 173 53.2
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.0e-41 174.5 327 35.8
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 7.7e-41 172.6 235 37.9
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 1.7e-40 171.4 131 67.2
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 2.9e-40 170.6 465 32.0
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 8.5e-40 169.1 304 35.9
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 1.1e-39 168.7 233 42.9
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.2e-39 167.2 182 49.5
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 3.6e-38 163.7 389 32.4
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.6e-38 163.7 344 33.1
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 2.6e-33 147.5 485 29.1
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 3.4e-33 147.1 147 50.3
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 1.0e-32 145.6 146 50.7
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 1.4e-31 141.7 289 33.6
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.9e-31 141.4 421 28.3
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.2e-31 140.6 386 32.4
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 1.6e-30 138.3 191 43.5
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.1e-30 137.9 391 29.7
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 1.0e-29 135.6 154 44.2
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 3.0e-29 134.0 232 37.5
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.5e-28 131.7 303 32.3
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.3e-27 126.3 239 35.1
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 4.1e-26 123.6 152 40.1
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 5.9e-25 119.8 100 55.0
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 3.6e-22 110.5 281 32.0
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.0e-21 109.0 389 27.2
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 2.3e-21 107.8 97 55.7
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 5.2e-21 106.7 139 41.7
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 7.5e-20 102.8 219 33.3
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.5e-16 89.7 257 28.8
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.5e-16 89.7 257 28.8
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.9e-15 88.2 150 33.3
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 1.0e-13 82.4 114 41.2
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.3e-11 75.5 181 30.4
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 4.8e-11 73.6 98 42.9
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 1.1e-10 72.4 155 31.6
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.1e-10 70.9 210 30.5
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 2.0e-09 68.2 69 50.7
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 5.9e-09 66.6 135 34.8
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 5.5e-07 60.1 71 43.7


User provided reference genes

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