Gene: COL.COLO4_18221

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_18221
  • Transcript Identifier COL.rna16984
  • Gene Type Coding gene
  • Location AWUE01016436.1 : 80284-83303 : positive

Gene Family Information

  • ID HOM05D004448
  • #Genes/#Species 161/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna16984
  • GenBank OMO91617.1
  • id gene18193
  • gene_name COLO4_18221
  • uniprot A0A1R3J9Z1

Descriptions

  • Description Ubiquitin
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT4G26170
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT5G56780
GO:2000033
ISO
PLAZA Integrative Orthologyregulation of seed dormancy process AT5G56780
GO:0010089
ISO
PLAZA Integrative Orthologyxylem development AT5G56780

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0005515
IEA
InterProprotein binding
GO:0097100
ISO
PLAZA Integrative Orthologysupercoiled DNA binding AT5G56780

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G26170
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT4G26170

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038909 Protein effector of transcription
IPR029071 Ubiquitin-like domain superfamily
IPR019956 Ubiquitin domain
IPR000626 Ubiquitin-like domain
Mapman id Description
15.5.40 RNA biosynthesis.transcriptional regulation.transcription factor (HRT)
19.2.2.1.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-fold protein (UBQ)