Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 0.0e+00 1258.4 716 100.0
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 0.0e+00 1207.6 717 96.0
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 0.0e+00 1182.5 717 95.1
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 0.0e+00 1179.9 717 95.0
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 0.0e+00 1178.7 721 94.0
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 0.0e+00 1167.9 726 93.5
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 0.0e+00 1166.4 726 93.4
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 0.0e+00 1165.2 720 89.7
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 0.0e+00 1146.7 603 97.2
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 0.0e+00 1146.0 699 91.8
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 0.0e+00 1130.2 744 89.5
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 0.0e+00 1129.4 720 84.6
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 0.0e+00 1129.0 746 89.3
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 1.4e-304 1049.3 724 76.1
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 6.1e-297 1023.8 730 76.8
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 3.4e-295 1018.1 731 75.0
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 9.8e-295 1016.5 732 78.7
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 5.4e-293 1010.7 728 74.6
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 1.2e-292 1009.6 727 76.1
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 1.7e-291 1005.7 645 80.2
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 2.3e-291 1005.4 779 70.0
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 5.0e-291 1004.2 721 77.1
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 6.6e-291 1003.8 731 74.1
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 8.6e-291 1003.4 721 77.1
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 1.2e-289 999.6 723 73.9
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 8.0e-289 996.9 728 75.5
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 8.9e-288 993.4 650 78.6
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 1.5e-287 992.6 726 72.6
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 3.4e-287 991.5 729 73.0
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 5.8e-287 990.7 733 72.9
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 4.1e-285 984.6 728 73.2
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.2e-284 983.0 512 92.8
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.2e-284 983.0 670 78.2
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 2.7e-284 981.9 628 80.6
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 3.5e-284 981.5 732 73.4
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 6.0e-284 980.7 720 72.6
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 2.3e-283 978.8 721 72.4
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 6.6e-283 977.2 718 73.8
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 1.5e-282 976.1 722 72.9
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 2.5e-282 975.3 611 81.5
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 3.3e-282 974.9 735 74.8
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 4.3e-282 974.5 713 73.5
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 2.1e-281 972.2 725 73.2
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 6.2e-281 970.7 635 78.7
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 3.1e-280 968.4 727 72.6
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 4.4e-279 964.5 685 73.6
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 4.9e-278 961.1 615 79.0
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 8.3e-278 960.3 635 77.2
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 1.1e-277 959.9 722 72.7
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 3.2e-277 958.4 739 73.7
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 4.1e-277 958.0 721 74.3
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 4.1e-277 958.0 721 74.3
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 1.2e-276 956.4 654 76.6
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 2.3e-275 952.2 644 77.0
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 2.3e-275 952.2 654 76.3
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 3.9e-275 951.4 723 70.8
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.5e-274 948.7 642 76.2
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.2e-273 946.4 725 73.7
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 2.8e-273 945.3 729 71.5
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 4.7e-273 944.5 718 71.0
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 4.7e-273 944.5 730 71.4
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 5.2e-272 941.0 722 70.6
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 6.8e-272 940.6 719 70.5
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 8.9e-272 940.3 646 73.8
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.2e-271 939.9 722 69.9
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 3.4e-271 938.3 726 71.3
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 4.4e-271 937.9 647 75.6
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 5.8e-271 937.6 561 82.4
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 4.9e-270 934.5 731 71.1
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 5.4e-269 931.0 708 70.2
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 7.8e-268 927.2 732 69.9
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 3.9e-267 924.9 640 74.2
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 5.1e-267 924.5 699 70.7
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 5.1e-267 924.5 694 72.3
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 4.7e-265 917.9 500 87.6
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 3.1e-264 915.2 642 74.8
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 6.4e-262 907.5 646 72.1
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 2.4e-261 905.6 685 70.7
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.9e-259 898.3 710 69.9
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 1.9e-258 896.0 637 72.4
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 3.3e-258 895.2 713 67.2
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 5.6e-258 894.4 594 79.6
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 8.1e-257 890.6 721 65.0
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 9.0e-256 887.1 642 71.5
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 1.3e-251 873.2 602 74.9
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.5e-250 869.8 638 69.4
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.6e-250 867.8 644 73.3
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 2.1e-249 865.9 644 70.0
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 3.6e-249 865.1 476 86.6
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.4e-248 862.4 728 67.2
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 2.6e-247 859.0 733 67.8
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 2.6e-239 832.4 715 65.2
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 6.0e-236 821.2 525 76.8
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.2e-231 807.0 527 79.3
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 7.9e-228 794.3 721 60.1
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.5e-226 789.3 617 70.0
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 1.9e-221 773.1 560 67.7
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 8.8e-219 764.2 636 62.7
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 2.2e-214 749.6 644 62.4
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 2.4e-208 729.6 504 69.6
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.7e-201 706.8 404 83.9
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 7.2e-189 664.8 341 90.9
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 3.0e-179 632.9 544 57.9
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.0e-175 620.2 652 57.8
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 3.6e-172 609.4 466 62.0
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 3.1e-171 606.3 470 61.7
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 8.6e-166 588.2 360 78.3
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.2e-159 567.8 424 73.3
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.8e-148 530.0 474 65.0
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 4.0e-131 473.0 502 49.0
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.1e-125 454.9 573 44.7
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 1.5e-125 454.5 504 53.8
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.6e-122 443.7 255 79.6
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 3.7e-108 396.7 689 38.6
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.6e-103 381.3 513 40.2
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.2e-100 370.9 214 83.2
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 7.0e-91 339.3 179 88.8
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 6.1e-87 326.2 312 64.7
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 6.7e-86 322.8 263 63.5
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.9e-72 278.1 157 80.3
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.8e-59 235.0 172 66.3
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 5.4e-51 206.8 366 47.5
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.4e-43 182.2 97 88.7
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 7.8e-42 176.4 218 54.1
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 3.0e-41 174.5 206 55.8
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 3.9e-41 174.1 237 49.4
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 5.6e-32 143.7 96 75.0
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.1e-27 129.4 201 63.2
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.4e-27 129.0 218 46.8
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 6.6e-25 120.2 76 82.9
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 3.5e-18 97.8 112 50.0
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.5e-08 65.9 195 33.8
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 3.7e-07 61.2 222 43.7


User provided reference genes

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