Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 5.5e-200 701.4 566 100.0
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.7e-169 600.1 567 89.9
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 6.2e-167 591.7 568 87.3
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 2.3e-166 589.7 561 90.4
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 5.2e-166 588.6 568 88.6
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 2.0e-165 586.6 569 86.3
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 3.2e-163 579.3 561 89.3
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 6.6e-161 571.6 557 89.9
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 1.5e-160 570.5 568 86.4
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 3.7e-156 555.8 567 87.1
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 4.9e-156 555.4 567 87.1
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 3.3e-144 516.2 525 86.3
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 4.6e-138 495.7 568 76.6
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 5.3e-134 482.3 570 67.9
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 5.1e-129 465.7 548 60.4
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 5.7e-96 355.9 577 57.4
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 8.5e-92 342.0 560 58.9
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 6.1e-90 335.9 578 62.3
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 6.1e-90 335.9 470 68.9
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 9.7e-88 328.6 576 59.0
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 3.7e-87 326.6 539 66.4
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 1.4e-86 324.7 533 49.2
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 5.3e-86 322.8 524 60.1
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 1.6e-85 321.2 526 63.3
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 1.6e-85 321.2 538 61.5
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 7.7e-85 318.9 587 58.4
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 1.3e-84 318.2 524 50.4
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 1.7e-84 317.8 525 49.5
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 6.5e-84 315.8 545 63.7
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 8.5e-84 315.5 609 51.6
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 1.9e-83 314.3 478 70.3
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 3.2e-83 313.5 538 57.4
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 1.2e-82 311.6 509 56.6
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 4.7e-82 309.7 580 53.6
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 8.0e-82 308.9 542 44.5
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 1.0e-81 308.5 580 59.5
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 8.8e-81 305.4 470 59.8
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 3.3e-80 303.5 526 55.3
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 3.3e-80 303.5 547 55.9
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 5.7e-80 302.8 584 61.5
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 6.3e-79 299.3 520 62.3
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 6.3e-79 299.3 521 62.8
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 1.4e-78 298.1 551 54.4
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 4.1e-78 296.6 497 49.3
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 7.0e-78 295.8 525 57.1
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 1.5e-75 288.1 480 56.5
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.9e-75 287.7 566 60.6
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 7.2e-75 285.8 530 63.6
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 7.2e-75 285.8 568 58.6
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 3.6e-74 283.5 506 45.1
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 6.1e-74 282.7 488 63.7
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 1.4e-73 281.6 475 61.1
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 3.0e-73 280.4 527 52.4
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 4.0e-73 280.0 452 60.4
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 4.0e-73 280.0 468 46.8
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 5.2e-73 279.6 577 52.5
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 5.2e-73 279.6 580 37.6
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 8.8e-73 278.9 559 53.8
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 1.2e-72 278.5 486 46.5
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 1.5e-72 278.1 480 57.9
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 2.0e-72 277.7 560 47.7
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 4.4e-72 276.6 455 61.3
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 4.4e-72 276.6 532 55.3
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.3e-71 275.0 534 52.2
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 2.8e-71 273.9 524 54.6
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 2.8e-71 273.9 466 62.2
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 4.8e-71 273.1 498 47.0
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 6.3e-71 272.7 530 62.1
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.8e-70 271.2 505 59.2
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 9.1e-70 268.9 505 59.0
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 1.0e-68 265.4 503 63.4
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 2.9e-68 263.8 477 63.7
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 3.8e-68 263.5 504 42.9
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 1.5e-67 261.5 516 57.9
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 2.5e-67 260.8 519 37.6
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 3.2e-67 260.4 530 55.3
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 7.2e-67 259.2 530 57.2
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 1.2e-66 258.5 465 46.2
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 2.1e-66 257.7 472 66.7
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 2.8e-66 257.3 471 60.3
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 3.6e-66 256.9 503 47.3
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 4.7e-66 256.5 488 54.9
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 8.0e-66 255.8 470 57.4
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 1.8e-65 254.6 562 52.8
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 2.6e-64 250.8 529 58.8
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 2.6e-64 250.8 455 46.8
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 6.3e-63 246.1 533 50.8
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 3.1e-62 243.8 425 57.9
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 5.4e-62 243.0 600 38.2
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 3.5e-61 240.4 467 55.0
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 9.5e-59 232.3 514 51.6
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 6.8e-57 226.1 480 43.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.3e-55 221.9 479 58.2
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 2.3e-52 211.1 387 50.6
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 6.8e-49 199.5 531 35.8
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 8.9e-49 199.1 156 71.8
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.7e-47 194.9 285 60.4
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 2.0e-45 188.0 324 56.8
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 1.0e-44 185.7 427 34.9
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 2.3e-44 184.5 335 45.4
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.9e-43 181.4 459 31.2
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 3.4e-40 170.6 458 29.7
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 4.9e-39 166.8 190 49.5
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.6e-37 161.8 488 28.3
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 1.0e-36 159.1 196 44.9
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 2.8e-34 151.0 86 91.9
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.4e-33 148.7 211 41.7
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 6.8e-33 146.4 129 55.0
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 5.6e-27 126.7 334 47.0
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 4.7e-26 123.6 118 51.7
C03p18390 Brassica napus HOM05D035051 ORTHO05D031918 4.0e-25 120.6 183 48.1
BolC3t14236H Brassica oleracea HOM05D035051 ORTHO05D031918 4.0e-25 120.6 183 48.1
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.0e-20 105.9 74 63.5
BcaC01g06180 Brassica carinata HOM05D035051 ORTHO05D031918 1.3e-20 105.5 172 45.9
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 8.7e-20 102.8 195 35.9
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.5e-19 101.3 85 60.0
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 4.3e-19 100.5 64 70.3
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.8e-18 97.1 355 27.0
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 1.7e-15 88.6 165 36.4
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.9e-14 85.1 322 49.4
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 7.1e-14 83.2 84 52.4
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.3e-12 79.0 123 31.7
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 8.7e-12 76.3 60 60.0
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.5e-11 74.7 136 34.6
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.3e-11 73.9 136 33.8
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 5.6e-11 73.6 54 59.3
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 7.4e-11 73.2 135 31.9
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 1.4e-09 68.9 52 61.5
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 1.8e-09 68.6 72 52.8
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 6.9e-09 66.6 115 36.5
BcaB04g17563 Brassica carinata HOM05D037002 ORTHO05D032729 1.3e-07 62.4 72 54.2
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 8.4e-07 59.7 50 58.0
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.4e-06 58.9 41 63.4
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 1.9e-06 58.5 33 81.8


User provided reference genes

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