Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 4.9e-168 594.3 291 100.0
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 2.4e-146 522.3 295 87.1
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 5.2e-146 521.2 291 87.6
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.2e-145 520.0 291 87.3
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.2e-145 520.0 291 87.3
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 2.0e-145 519.2 294 86.7
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 2.6e-145 518.8 294 89.5
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.1e-143 513.5 293 86.3
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 1.1e-143 513.5 291 86.6
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 2.4e-143 512.3 291 86.3
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 3.2e-143 511.9 291 87.3
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 7.8e-142 507.3 294 86.4
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 5.3e-138 494.6 294 81.3
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 2.1e-126 456.1 292 77.1
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 5.0e-104 381.7 292 66.1
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 2.5e-103 379.4 292 64.7
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 4.2e-103 378.6 293 66.6
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.2e-102 377.1 291 66.3
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 4.7e-102 375.2 292 64.7
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.4e-101 373.6 293 65.5
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 3.0e-101 372.5 294 65.0
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.7e-101 371.3 293 65.5
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 8.8e-101 370.9 294 65.0
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 7.4e-100 367.9 291 62.9
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.7e-99 365.5 292 64.7
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 4.8e-99 365.2 295 63.4
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.1e-98 362.1 293 64.2
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 1.0e-96 357.5 292 62.0
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 2.2e-96 356.3 290 62.8
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 2.9e-96 355.9 296 61.5
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 6.5e-96 354.8 292 61.6
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-95 354.0 292 61.6
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.4e-95 353.6 292 62.0
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 1.6e-94 350.1 292 61.6
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 5.2e-93 345.1 294 61.2
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 5.2e-93 345.1 294 61.2
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 4.4e-92 342.0 292 59.6
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 5.7e-92 341.7 293 60.8
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 7.4e-92 341.3 295 58.0
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 2.2e-91 339.7 235 68.5
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 2.2e-91 339.7 287 60.3
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 3.7e-91 339.0 296 59.8
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 3.7e-91 339.0 296 59.8
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 3.7e-91 339.0 280 62.5
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 8.2e-91 337.8 293 61.1
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.1e-90 337.4 295 58.0
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 3.1e-90 335.9 291 59.8
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 4.1e-90 335.5 290 58.3
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 5.3e-90 335.1 295 57.3
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 1.2e-89 334.0 321 55.5
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 1.2e-89 334.0 276 61.6
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.2e-89 334.0 290 59.7
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 2.0e-89 333.2 287 59.2
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 2.0e-89 333.2 296 61.5
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 3.5e-89 332.4 292 60.6
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 1.0e-88 330.9 290 58.6
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.9e-88 329.3 263 63.5
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 2.9e-88 329.3 290 58.6
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 8.5e-88 327.8 260 65.8
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.1e-87 327.4 290 58.3
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.1e-87 327.4 263 62.7
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.5e-87 327.0 297 57.2
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.5e-87 327.0 277 61.0
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 2.5e-87 326.2 349 52.1
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 3.2e-87 325.9 290 59.3
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 3.2e-87 325.9 304 57.2
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 7.2e-87 324.7 293 58.7
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 3.6e-86 322.4 292 58.6
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 4.7e-86 322.0 293 56.7
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 6.1e-86 321.6 304 55.9
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 6.1e-86 321.6 288 56.9
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 1.4e-85 320.5 294 59.2
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 1.8e-85 320.1 290 55.9
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 8.8e-85 317.8 295 58.6
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 1.2e-84 317.4 297 57.2
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 1.2e-84 317.4 293 58.7
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 2.0e-84 316.6 294 56.1
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 3.3e-84 315.8 321 53.6
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.3e-83 313.9 269 59.9
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 2.2e-83 313.2 279 59.1
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 2.2e-83 313.2 260 61.2
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 3.7e-83 312.4 229 65.9
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 4.8e-83 312.0 257 61.5
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 4.8e-83 312.0 289 58.8
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 4.8e-83 312.0 295 58.3
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 8.3e-83 311.2 299 56.9
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.1e-82 310.8 293 57.0
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 2.4e-82 309.7 332 51.5
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 3.1e-82 309.3 287 56.8
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 7.0e-82 308.1 293 54.6
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.6e-81 307.0 281 55.2
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.3e-80 303.9 282 57.8
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.9e-80 302.8 255 62.4
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 5.0e-80 302.0 290 54.5
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 8.0e-78 294.7 206 68.9
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 1.2e-76 290.8 237 59.1
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 1.3e-75 287.3 291 52.9
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.7e-75 287.0 226 65.5
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 2.8e-75 286.2 275 56.4
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 4.8e-75 285.4 284 54.2
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 2.4e-74 283.1 207 65.2
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.4e-74 282.0 297 52.9
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 7.0e-74 281.6 215 63.7
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.5e-73 279.3 226 61.9
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 3.3e-71 272.7 227 60.4
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.0e-68 263.5 269 53.2
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 1.1e-66 257.7 258 55.4
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.6e-62 243.8 285 46.7
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.4e-58 230.7 188 59.0
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 8.0e-54 214.9 205 54.1
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.4e-53 214.2 227 55.1
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 2.0e-52 210.3 234 52.1
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 4.9e-51 205.7 242 46.3
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 8.3e-51 204.9 205 55.1
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 1.9e-50 203.8 216 52.3
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.2e-50 203.0 208 52.9
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 1.2e-49 201.1 218 51.4
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 4.6e-49 199.1 284 42.6
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 4.6e-49 199.1 148 67.6
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 1.3e-48 197.6 299 37.5
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 5.1e-48 195.7 181 58.0
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 3.4e-44 183.0 130 66.9
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 5.8e-44 182.2 272 43.4
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 3.7e-43 179.5 243 44.4
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 1.9e-42 177.2 122 68.0
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.1e-39 167.9 294 39.5
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.8e-38 163.3 106 73.6
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 2.8e-38 163.3 114 66.7
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 3.6e-38 162.9 205 48.3
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 2.0e-36 157.1 170 51.8
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 3.3e-31 139.8 305 33.8
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.3e-27 127.9 141 52.5
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.7e-27 127.5 86 72.1
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 4.2e-26 122.9 199 42.2
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 2.1e-25 120.6 217 38.2
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 3.4e-20 103.2 172 41.3
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 7.9e-17 92.0 227 29.1
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 3.7e-14 83.2 257 26.1
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 8.4e-11 72.0 137 37.2
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 3.0e-08 63.5 113 37.2
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 8.2e-06 55.5 90 42.2


User provided reference genes

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